Jatropha Genome Database

JcCB0508071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0508071.10 + phase: 0 /partial
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761...    64   3e-11
AT3G32400.1 | Symbols:  | formin homology 2 domain-containing pr...    52   1e-07
AT2G25050.1 | Symbols:  | formin homology 2 domain-containing pr...    51   2e-07
AT5G07770.1 | Symbols:  | formin homology 2 domain-containing pr...    48   1e-06

>AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761
           REVERSE
          Length = 1230

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/32 (81%), Positives = 30/32 (93%)

Query: 61  APRKTSLKPLHWVKVTRAVQGSLWADSQKQEN 92
           AP+KT+LKPLHW KVTRA +GSLWAD+QKQEN
Sbjct: 813 APKKTALKPLHWSKVTRAAKGSLWADTQKQEN 844


>AT3G32400.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr3:13356995-13360572 REVERSE
          Length = 488

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 28/33 (84%)

Query: 63  RKTSLKPLHWVKVTRAVQGSLWADSQKQENLSS 95
           RK +LKP HW+K+TRAVQGSLWA++QK +  ++
Sbjct: 84  RKANLKPYHWLKLTRAVQGSLWAEAQKSDEAAT 116


>AT2G25050.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr2:10654108-10659383 REVERSE
          Length = 1111

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 28/33 (84%)

Query: 63  RKTSLKPLHWVKVTRAVQGSLWADSQKQENLSS 95
           RK +LKP HW+K+TRAVQGSLWA++QK +  ++
Sbjct: 708 RKANLKPYHWLKLTRAVQGSLWAEAQKSDEAAT 740


>AT5G07770.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2474816-2479022 FORWARD
          Length = 722

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/28 (67%), Positives = 25/28 (89%)

Query: 63  RKTSLKPLHWVKVTRAVQGSLWADSQKQ 90
           +++SLKPLHWVK+TRA+QGSLW + Q Q
Sbjct: 188 KRSSLKPLHWVKITRALQGSLWDELQIQ 215