Jatropha Genome Database

JcCB0507301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0507301.10 - phase: 0 /partial
         (221 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de...   358   1e-99
AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de...   358   1e-99
AT2G29980.1 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3); om...   129   1e-30
AT2G29980.2 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3); om...   128   2e-30
AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE ...   120   6e-28
AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8); om...   116   1e-26
AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | FAD6 (FATTY ACID DESAT...    72   4e-13

>AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
           delta12-fatty acid dehydrogenase/ omega-6 fatty acid
           desaturase | chr3:3860592-3861743 REVERSE
          Length = 383

 Score =  358 bits (919), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 187/221 (84%)

Query: 1   MGAGGRMSVPPSPKKLEAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDL 60
           MGAGGRM VP S KK E +  KRVP  KPPF++G +KKAIPPHCF+RS+ RSFSY++ D+
Sbjct: 1   MGAGGRMPVPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDI 60

Query: 61  TLAFIFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDD 120
            +A  FYYVATNYF LLPQPLSY+AWP+YW+ QGCVLTGIWVIAHECGHHAFSDYQWLDD
Sbjct: 61  IIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDD 120

Query: 121 IVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLF 180
            VGL+ HS LLVPYFSWK+SHRRHHSNTGSLERDEVFVPK+KS I+W+ KYLNN  GR+ 
Sbjct: 121 TVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIM 180

Query: 181 TLTITLALGWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
            LT+   LGWPLYLAFNVSGR YD FACHF P  PIYNDRE
Sbjct: 181 MLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRE 221


>AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
           delta12-fatty acid dehydrogenase/ omega-6 fatty acid
           desaturase | chr3:3860592-3861743 REVERSE
          Length = 383

 Score =  358 bits (919), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 187/221 (84%)

Query: 1   MGAGGRMSVPPSPKKLEAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDL 60
           MGAGGRM VP S KK E +  KRVP  KPPF++G +KKAIPPHCF+RS+ RSFSY++ D+
Sbjct: 1   MGAGGRMPVPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDI 60

Query: 61  TLAFIFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDD 120
            +A  FYYVATNYF LLPQPLSY+AWP+YW+ QGCVLTGIWVIAHECGHHAFSDYQWLDD
Sbjct: 61  IIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDD 120

Query: 121 IVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLF 180
            VGL+ HS LLVPYFSWK+SHRRHHSNTGSLERDEVFVPK+KS I+W+ KYLNN  GR+ 
Sbjct: 121 TVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIM 180

Query: 181 TLTITLALGWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
            LT+   LGWPLYLAFNVSGR YD FACHF P  PIYNDRE
Sbjct: 181 MLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRE 221


>AT2G29980.1 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3);
           omega-3 fatty acid desaturase | chr2:12781787-12784946
           REVERSE
          Length = 386

 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 118/218 (54%), Gaps = 18/218 (8%)

Query: 6   RMSVPPSPKKLEAEVLKRV-PYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAF 64
           R +V   P   + +  +R  P ++PPF +G ++ AIP HC+ +S LRS SYVV D+    
Sbjct: 8   RTNVNGDPGAGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVA 67

Query: 65  IFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGL 124
                A           S+  WP+YW+ QG +   I+V+ H+CGH +FSD   L+ +VG 
Sbjct: 68  ALAIAAVYVD-------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGH 120

Query: 125 LLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLFTLTI 184
           +LHS +LVPY  W+ SHR HH N G +E DE +VP  +   R + K  ++   R+   T+
Sbjct: 121 ILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPE---RVYKKLPHST--RMLRYTV 175

Query: 185 TL-ALGWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
            L  L +PLYL +   G+       HF+PY  ++   E
Sbjct: 176 PLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSE 209


>AT2G29980.2 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3);
           omega-3 fatty acid desaturase | chr2:12782257-12784946
           REVERSE
          Length = 288

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 118/218 (54%), Gaps = 18/218 (8%)

Query: 6   RMSVPPSPKKLEAEVLKRV-PYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAF 64
           R +V   P   + +  +R  P ++PPF +G ++ AIP HC+ +S LRS SYVV D+    
Sbjct: 8   RTNVNGDPGAGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVA 67

Query: 65  IFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGL 124
                A           S+  WP+YW+ QG +   I+V+ H+CGH +FSD   L+ +VG 
Sbjct: 68  ALAIAAVYVD-------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGH 120

Query: 125 LLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLFTLTI 184
           +LHS +LVPY  W+ SHR HH N G +E DE +VP  +   R + K  ++   R+   T+
Sbjct: 121 ILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPE---RVYKKLPHST--RMLRYTV 175

Query: 185 TL-ALGWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
            L  L +PLYL +   G+       HF+PY  ++   E
Sbjct: 176 PLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSE 209


>AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE 7);
           omega-3 fatty acid desaturase | chr3:3499959-3502126
           FORWARD
          Length = 446

 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 18/208 (8%)

Query: 16  LEAEVLKRV-PYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAFIFYYVATNYF 74
           LE +  +R  P + PPF L  ++ AIP HC+ ++  +S SYVV D+ + F     A  Y 
Sbjct: 80  LEEDNKQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAA-YL 138

Query: 75  HLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPY 134
           +      +++ WP+YW  QG +   ++V+ H+CGH +FS+   L+ +VG LLHS +LVPY
Sbjct: 139 N------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPY 192

Query: 135 FSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLFTLTITLA-LGWPLY 193
             W+ SHR HH N G +E DE + P  +       K     P R F  T+ L  L +P Y
Sbjct: 193 HGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDK-----PTRFFRFTLPLVMLAYPFY 247

Query: 194 LAFNVSGRHYDRFACHFDPYGPIYNDRE 221
           L     G+       H+ P   ++  +E
Sbjct: 248 LWARSPGKK----GSHYHPDSDLFLPKE 271


>AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8);
           omega-3 fatty acid desaturase | chr5:1664331-1666345
           FORWARD
          Length = 435

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 17/206 (8%)

Query: 17  EAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAFIFYYVATNYFHL 76
           E +  +  P + PPF L  ++ AIP HC+ ++   S SYVV D+ + F    VA  YF+ 
Sbjct: 75  EEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAA-YFN- 132

Query: 77  LPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFS 136
                +++ WP+YW  QG +   ++V+ H+CGH +FS+   L+ + G LLHS +LVPY  
Sbjct: 133 -----NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHG 187

Query: 137 WKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLFTLTITL-ALGWPLYLA 195
           W+ SHR HH N G +E DE + P  +S  +   K       ++F  T+    L +P YL 
Sbjct: 188 WRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTT-----QMFRFTLPFPMLAYPFYLW 242

Query: 196 FNVSGRHYDRFACHFDPYGPIYNDRE 221
               G+       H+ P   ++  +E
Sbjct: 243 NRSPGKQ----GSHYHPDSDLFLPKE 264


>AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | FAD6 (FATTY ACID
           DESATURASE 6); omega-6 fatty acid desaturase |
           chr4:15057278-15059673 REVERSE
          Length = 448

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 32  TLGQVKKAIPPHCFQRSVLRSFSYVVYDLT-LAFIFYYVATNYFHLLPQPLSYVAWPIYW 90
           TL  +   +P   F+   L++   V+  +T      + +A + ++LLP         + W
Sbjct: 106 TLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLP---------LAW 156

Query: 91  SLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFSWKHSHRRHHSNTGS 150
           +  G  +TG +VI H+C H +FS  + ++DIVG L    L+ PY  W+  H RHH+ T  
Sbjct: 157 AWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNM 216

Query: 151 LERDEVFVP 159
           L  D  + P
Sbjct: 217 LVHDTAWQP 225