Jatropha Genome Database

JcCB0506361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0506361.10 + phase: 0 /pseudo/partial
         (235 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21710.1 | Symbols: OGG1, ATOGG1 | OGG1 (8-OXOGUANINE-DNA GLY...   216   7e-57

>AT1G21710.1 | Symbols: OGG1, ATOGG1 | OGG1 (8-OXOGUANINE-DNA
           GLYCOSYLASE 1); oxidized purine base lesion DNA
           N-glycosylase | chr1:7624439-7625869 FORWARD
          Length = 365

 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 117/134 (87%)

Query: 6   RAKYITGTVDALQSKPGGGAEWLSSLRKSDLQVVVDALCTLPGVGPKVASCIALFSLDQH 65
           RAKYITGTV+ALQ+KPGGG EWL SLRK +LQ  V ALCTLPGVGPKVA+CIALFSLDQH
Sbjct: 215 RAKYITGTVNALQAKPGGGNEWLLSLRKVELQEAVAALCTLPGVGPKVAACIALFSLDQH 274

Query: 66  HAIPVDTHVWQIATRYLLPELAAVRLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS 125
            AIPVDTHVWQIAT YLLP+LA  +LTPKL  RVA+AFVSKYG+YAGWAQTLLFIAELP+
Sbjct: 275 SAIPVDTHVWQIATNYLLPDLAGAKLTPKLHGRVAEAFVSKYGEYAGWAQTLLFIAELPA 334

Query: 126 QKTLLPSHFWTINE 139
           QKTLL S    IN+
Sbjct: 335 QKTLLQSFSQPINK 348