Jatropha Genome Database

JcCB0504061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.20 + phase: 1 /pseudo/partial
         (72 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04410.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...    60   3e-10
AT5G43330.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...    60   4e-10
AT5G56720.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...    56   4e-09

>AT1G04410.1 | Symbols:  | malate dehydrogenase, cytosolic,
          putative | chr1:1189418-1191267 REVERSE
          Length = 332

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARGIMLG DQPVILHMLDI  AA+AL GVK
Sbjct: 23 PMIARGIMLGADQPVILHMLDIPPAAEALNGVK 55


>AT5G43330.1 | Symbols:  | malate dehydrogenase, cytosolic,
          putative | chr5:17390552-17392449 FORWARD
          Length = 332

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARGIMLG DQPVILHMLDI  AA+AL GVK
Sbjct: 23 PMIARGIMLGADQPVILHMLDIPFAAEALNGVK 55


>AT5G56720.1 | Symbols:  | malate dehydrogenase, cytosolic,
          putative | chr5:22945537-22946718 FORWARD
          Length = 339

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARGIMLG DQP+ILH+LDIE A+ +LE VK
Sbjct: 29 PMIARGIMLGPDQPMILHLLDIEPASSSLEAVK 61