Jatropha Genome Database

JcCB0504061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.10 + phase: 1 /partial
         (83 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56720.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...   146   2e-36
AT1G04410.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...   138   8e-34
AT5G43330.1 | Symbols:  | malate dehydrogenase, cytosolic, putat...   135   6e-33
AT5G58330.1 | Symbols:  | malate dehydrogenase (NADP), chloropla...    60   4e-10
AT5G58330.2 | Symbols:  | malate dehydrogenase (NADP), chloropla...    60   4e-10
AT5G58330.3 | Symbols:  | malate dehydrogenase (NADP), chloropla...    59   5e-10

>AT5G56720.1 | Symbols:  | malate dehydrogenase, cytosolic, putative
           | chr5:22945537-22946718 FORWARD
          Length = 339

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 70/81 (86%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDW  GTPKGTWVSMGV SDGSYGI PGL+YSFPV CEKG+W IVQGL IDEFSR 
Sbjct: 258 CDHIRDWFLGTPKGTWVSMGVCSDGSYGIPPGLVYSFPVICEKGSWKIVQGLSIDEFSRE 317

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           KMD +A+EL EEK LAYSCLN
Sbjct: 318 KMDDSARELAEEKDLAYSCLN 338


>AT1G04410.1 | Symbols:  | malate dehydrogenase, cytosolic, putative
           | chr1:1189418-1191267 REVERSE
          Length = 332

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 69/81 (85%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GT+VSMGVYSDGSY +  GLIYSFPVTC  G+WSIVQGL IDE SR 
Sbjct: 252 CDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRK 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           KMD TA+EL EEK LAYSCL+
Sbjct: 312 KMDLTAEELKEEKDLAYSCLS 332


>AT5G43330.1 | Symbols:  | malate dehydrogenase, cytosolic, putative
           | chr5:17390552-17392449 FORWARD
          Length = 332

 Score =  135 bits (339), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 68/81 (83%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GT+VSMGVYSDGSY +  GLIYSFPVTC  G W+IVQGL ID+ SR 
Sbjct: 252 CDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRK 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           KMD TA+EL EEK LAYSCL+
Sbjct: 312 KMDLTAEELKEEKDLAYSCLS 332


>AT5G58330.1 | Symbols:  | malate dehydrogenase (NADP), chloroplast,
           putative | chr5:23580010-23582287 REVERSE
          Length = 443

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFSR 61
           D I+  V  TP+G W S GVY+DG+ YGI+ GL++S P   +  G++ +V+ ++ID++ R
Sbjct: 343 DAIKSLVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLR 402

Query: 62  AKMDATAKELTEEK 75
            ++  +  EL  EK
Sbjct: 403 QRIAKSEAELLAEK 416


>AT5G58330.2 | Symbols:  | malate dehydrogenase (NADP), chloroplast,
           putative | chr5:23580010-23582287 REVERSE
          Length = 442

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFSR 61
           D I+  V  TP+G W S GVY+DG+ YGI+ GL++S P   +  G++ +V+ ++ID++ R
Sbjct: 342 DAIKSLVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLR 401

Query: 62  AKMDATAKELTEEK 75
            ++  +  EL  EK
Sbjct: 402 QRIAKSEAELLAEK 415


>AT5G58330.3 | Symbols:  | malate dehydrogenase (NADP), chloroplast,
           putative | chr5:23580010-23581751 REVERSE
          Length = 334

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFS 60
            D I+  V  TP+G W S GVY+DG+ YGI+ GL++S P   +  G++ +V+ ++ID++ 
Sbjct: 233 VDAIKSLVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYL 292

Query: 61  RAKMDATAKELTEEK 75
           R ++  +  EL  EK
Sbjct: 293 RQRIAKSEAELLAEK 307