Jatropha Genome Database

JcCB0499871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0499871.10 - phase: 0 
         (277 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19860.2 | Symbols:  | basic helix-loop-helix (bHLH) family p...   222   2e-58
AT3G19860.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...   221   3e-58
AT4G36060.2 | Symbols:  | basic helix-loop-helix (bHLH) family p...   130   9e-31
AT4G36060.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...   130   1e-30
AT5G54680.1 | Symbols: ILR3 | ILR3 (iaa-leucine resistant3); DNA...    55   4e-08
AT3G47640.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    50   1e-06
AT3G23210.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    50   1e-06
AT4G14410.2 | Symbols:  | basic helix-loop-helix (bHLH) family p...    50   2e-06
AT4G14410.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    50   2e-06
AT1G51070.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    48   5e-06

>AT3G19860.2 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:6903842-6905863 FORWARD
          Length = 337

 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 148/206 (71%), Gaps = 10/206 (4%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DP+RPKNDKATIL DT+QLLK+LTS+VNKLK+EYT LT+ESRELTQEKNDLREEK SLKS
Sbjct: 86  DPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKS 145

Query: 82  DIENLNIQYQQRLRSTYPW-VAMDHSVVMAPTSYXXXXXX-XXXXXXXXXXXSMQPYPFF 139
           DIENLN+QYQQRLRS  PW  AMDH+V+MAP                     SM  Y +F
Sbjct: 146 DIENLNLQYQQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYF 205

Query: 140 GNQNPAVIHNPCSTFVPYVTPNTLVDQQSTQRASSFAQPASGSHVSGKQDSKIKLSGESK 199
           GNQNP++I  PC T++PY+ PNT+V+QQS     +   P + S     ++ + K+S ES+
Sbjct: 206 GNQNPSMIPAPCPTYMPYMPPNTVVEQQSVHIPQN---PGNRS-----REPRAKVSRESR 257

Query: 200 VGKSLDSNDVTTELELKTPGSMTDQD 225
             K+ DSN+V T+LELKTPGS +D+D
Sbjct: 258 SEKAEDSNEVATQLELKTPGSTSDKD 283


>AT3G19860.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:6904579-6905863 FORWARD
          Length = 284

 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 148/206 (71%), Gaps = 10/206 (4%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DP+RPKNDKATIL DT+QLLK+LTS+VNKLK+EYT LT+ESRELTQEKNDLREEK SLKS
Sbjct: 33  DPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKS 92

Query: 82  DIENLNIQYQQRLRSTYPW-VAMDHSVVMAPTSYXXXXXX-XXXXXXXXXXXSMQPYPFF 139
           DIENLN+QYQQRLRS  PW  AMDH+V+MAP                     SM  Y +F
Sbjct: 93  DIENLNLQYQQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYF 152

Query: 140 GNQNPAVIHNPCSTFVPYVTPNTLVDQQSTQRASSFAQPASGSHVSGKQDSKIKLSGESK 199
           GNQNP++I  PC T++PY+ PNT+V+QQS     +   P + S     ++ + K+S ES+
Sbjct: 153 GNQNPSMIPAPCPTYMPYMPPNTVVEQQSVHIPQN---PGNRS-----REPRAKVSRESR 204

Query: 200 VGKSLDSNDVTTELELKTPGSMTDQD 225
             K+ DSN+V T+LELKTPGS +D+D
Sbjct: 205 SEKAEDSNEVATQLELKTPGSTSDKD 230


>AT4G36060.2 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:17055521-17056567 FORWARD
          Length = 268

 Score =  130 bits (327), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 121/216 (56%), Gaps = 51/216 (23%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DP+RPK+DKA++L DTIQ+LKD+ +QV++LKAEY TL++ESREL QEK++LREEKA+LKS
Sbjct: 54  DPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKS 113

Query: 82  DIENLNIQYQQRLRSTYPWVAMDHSVVMAPTSYXXXXXXXXXXXXXXXXXSMQPYPFFGN 141
           DIE LN QYQ R+++  PWV                                   P +  
Sbjct: 114 DIEILNAQYQHRIKTMVPWV-----------------------------------PHYSY 138

Query: 142 QNPAV-IHNPCSTFVPY-VTPNTLVDQQ-STQRASSFAQPASGSHVSGKQDSKIK----- 193
             P V I    S+F+PY  + N L +QQ S Q+ SS     S +  S KQDSKIK     
Sbjct: 139 HIPFVAITQGQSSFIPYSASVNPLTEQQASVQQHSS-----SSADASMKQDSKIKPLDLD 193

Query: 194 -LSGESKVGKSLD-SNDVTTELELKT-PGSMTDQDL 226
            +   +  G+  D  +DV  +LELK    S+  QD+
Sbjct: 194 LMMNSNHSGQGNDQKDDVRLKLELKIHASSLAQQDV 229


>AT4G36060.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:17055397-17056567 FORWARD
          Length = 286

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 121/216 (56%), Gaps = 51/216 (23%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DP+RPK+DKA++L DTIQ+LKD+ +QV++LKAEY TL++ESREL QEK++LREEKA+LKS
Sbjct: 72  DPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKS 131

Query: 82  DIENLNIQYQQRLRSTYPWVAMDHSVVMAPTSYXXXXXXXXXXXXXXXXXSMQPYPFFGN 141
           DIE LN QYQ R+++  PWV                                   P +  
Sbjct: 132 DIEILNAQYQHRIKTMVPWV-----------------------------------PHYSY 156

Query: 142 QNPAV-IHNPCSTFVPY-VTPNTLVDQQ-STQRASSFAQPASGSHVSGKQDSKIK----- 193
             P V I    S+F+PY  + N L +QQ S Q+ SS     S +  S KQDSKIK     
Sbjct: 157 HIPFVAITQGQSSFIPYSASVNPLTEQQASVQQHSS-----SSADASMKQDSKIKPLDLD 211

Query: 194 -LSGESKVGKSLD-SNDVTTELELKT-PGSMTDQDL 226
            +   +  G+  D  +DV  +LELK    S+  QD+
Sbjct: 212 LMMNSNHSGQGNDQKDDVRLKLELKIHASSLAQQDV 247


>AT5G54680.1 | Symbols: ILR3 | ILR3 (iaa-leucine resistant3); DNA
           binding / transcription factor | chr5:22217270-22218993
           FORWARD
          Length = 234

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 26  PKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKSDIEN 85
           PK DKA IL D ++++  L  +  KLK   ++L ++ +EL  EKN+LR+EK  LK++ E 
Sbjct: 104 PKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEK 163

Query: 86  LNIQYQQRLRS-TYPWVAMDHSVVMAPTSY 114
           L    +Q+L++   P  +   +  M PT++
Sbjct: 164 L----EQQLKAMNAPQPSFFPAPPMMPTAF 189


>AT3G47640.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:17568035-17569101 FORWARD
          Length = 240

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query: 30  KATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKSDIENLNIQ 89
           KA+IL +  + LKD+  Q+  L+ E+ +L  ES  +T EKN+L+EE + L+++I  L  +
Sbjct: 63  KASILCEATRFLKDVFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNE 122

Query: 90  YQQRLRSTYP 99
            + R   + P
Sbjct: 123 IEARANQSKP 132


>AT3G23210.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:8283255-8284915 REVERSE
          Length = 320

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 22  DPDR-PKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P R PK DK+ IL D I+++  L  + ++L+     L EE + L  +KN+LREEK  LK
Sbjct: 190 EPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLK 249

Query: 81  SDIENLNIQYQQR-------LRSTYPWVAMDHSVVMA-PTSY 114
           ++ E +  Q +         + S +P     H + +A P  Y
Sbjct: 250 AEKEKMEQQLKSMVVPSPGFMPSQHPAAFHSHKMAVAYPYGY 291


>AT4G14410.2 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:8300418-8301503 FORWARD
          Length = 277

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 22  DPDR-PKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P R PK DK  IL D I++L  L  +  KL+     L EE + L  EKN+LREEK  LK
Sbjct: 152 EPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLK 211

Query: 81  SDIENLNIQYQQRLRS 96
           +D E    + +Q+L+S
Sbjct: 212 ADKE----KTEQQLKS 223


>AT4G14410.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:8300077-8301503 FORWARD
          Length = 283

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 22  DPDR-PKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P R PK DK  IL D I++L  L  +  KL+     L EE + L  EKN+LREEK  LK
Sbjct: 158 EPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLK 217

Query: 81  SDIENLNIQYQQRLRS 96
           +D E    + +Q+L+S
Sbjct: 218 ADKE----KTEQQLKS 229


>AT1G51070.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr1:18928018-18929513 FORWARD
          Length = 226

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 22  DPDR-PKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P R PK DK  I+ D I+++     +  KLK   ++L E+ +EL  EKN+LR+EK  LK
Sbjct: 94  EPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLK 153

Query: 81  SDIENLNIQYQ 91
            + E ++ Q +
Sbjct: 154 VEKERIDQQLK 164