Jatropha Genome Database
- JcCB0498951.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0498951.10 + phase: 0 /pseudo/partial
(236 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1 (CARO... 140 8e-34
AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6 (NINE-CIS-EPOXYCAR... 63 1e-10
AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9 (NINE-CIS-EPOXYCAR... 63 1e-10
AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5 (NINE-CIS-EPOXYCAR... 61 7e-10
AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2 (NINE-CIS-EPOXYCAR... 58 5e-09
AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3 (NINE-... 57 1e-08
AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID D... 55 4e-08
>AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | CCD1
(CAROTENOID CLEAVAGE DIOXYGENASE 1);
9-cis-epoxycarotenoid dioxygenase |
chr3:23452940-23455896 FORWARD
Length = 538
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 1 NDGPAIVEVNPKPNKGLTSKLVDYLEKLIVKLMFDKSQPLHYLNGNFAPV-PEAPPVKDL 59
+DG +I+ V+P+P+KG +SKL+D LE+L+VKLM D S PLHYL+GNFAP+ E PPVKDL
Sbjct: 6 SDGSSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDL 65
Query: 60 PVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
PV G LPECLNGEFVRVGPNPKF VAGYH + G+
Sbjct: 66 PVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGD 100
>AT3G24220.1 | Symbols: NCED6, ATNCED6 | NCED6
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6);
9-cis-epoxycarotenoid dioxygenase | chr3:8761439-8763172
FORWARD
Length = 577
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 4 PAIVEVNPK-PNKGLTSKL----VDYLEKLIVKLMFDK------SQPLHYLNGNFAPVPE 52
P+ V++ P PN L KL +D +E IV M + P L+GNFAPV E
Sbjct: 51 PSPVKLKPTYPNLNLLQKLAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNE 110
Query: 53 APPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
P L V+G +P CL G ++R G NP F P+AG+H + G+
Sbjct: 111 CPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGD 152
>AT1G78390.1 | Symbols: NCED9, ATNCED9 | NCED9
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9);
9-cis-epoxycarotenoid dioxygenase |
chr1:29490895-29492868 REVERSE
Length = 657
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 4 PAIVEVNPK--PNKGLTSKLVDYLEKLIVKLMFDK------SQPLHYLNGNFAPVPEAPP 55
P NPK P + + ++D +E ++ + + P + GNF PVPE P
Sbjct: 136 PKTTNQNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVPEKPV 195
Query: 56 VKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
V +LPV G +PEC+ G +VR G NP PV+G+H + G+
Sbjct: 196 VHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGD 234
>AT1G30100.1 | Symbols: NCED5, ATNCED5 | NCED5
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5);
9-cis-epoxycarotenoid dioxygenase |
chr1:10571383-10573152 FORWARD
Length = 589
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 9/89 (10%)
Query: 13 PNKGLTSKLVDYLEKLIVKLMFDKSQPL-------HYLNGNFAPVPEAPPVKDLPVIGHL 65
P + S +D+ E +++ ++S+PL H ++GN+APVPE L V G +
Sbjct: 78 PLQRAASAALDFAETALLRR--ERSKPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKI 135
Query: 66 PECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
P+C++G ++R G NP F PV+G+H + G+
Sbjct: 136 PDCIDGVYLRNGANPLFEPVSGHHLFDGD 164
>AT4G18350.1 | Symbols: NCED2, ATNCED2 | NCED2
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2);
9-cis-epoxycarotenoid dioxygenase |
chr4:10142672-10144423 FORWARD
Length = 583
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 37 SQPLHYLNGNFAPVPEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
+ P + GN++PVPE+ ++L V G +P+C++G ++R G NP F P AG+H + G+
Sbjct: 100 ADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGD 157
>AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | NCED3
(NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3);
9-cis-epoxycarotenoid dioxygenase | chr3:4831678-4833477
REVERSE
Length = 599
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 37 SQPLHYLNGNFAPVPEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
+ P + GNFAPV E P ++LPV+G LP+ + G +VR G NP PV G+H + G+
Sbjct: 117 ADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGD 174
>AT4G19170.1 | Symbols: NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID
DIOXYGENASE 4) | chr4:10481835-10483622 FORWARD
Length = 595
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 12 KPNKGLTSKLVDYLEKLIVKLMFDKSQPL----HYLNGNFAPVPEAPPVKDLPVI-GHLP 66
+P L + L +E +I + S+P H L+ NFAPV + P D +I G LP
Sbjct: 76 RPEMTLATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLP 135
Query: 67 ECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
LNG ++R GPNP+F P YH + G+
Sbjct: 136 LSLNGAYIRNGPNPQFLPRGPYHLFDGD 163