Jatropha Genome Database

JcCB0496561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0496561.10 + phase: 2 /partial
         (104 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23230.1 | Symbols:  | ethylene-responsive factor, putative |...    50   3e-07

>AT3G23230.1 | Symbols:  | ethylene-responsive factor, putative |
           chr3:8289647-8290066 REVERSE
          Length = 139

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 1   GTFDTXXXXXXXXXXXXFSMRGHLAILNFPNEYYSRVIXXXXXXXXXXXXXXXXXXXXXX 60
           GTF+T            F++RGHLAILNFPNEYY R+                       
Sbjct: 48  GTFETAEEAARAYDRAAFNLRGHLAILNFPNEYYPRM------DDYSLRPPYASSSSSSS 101

Query: 61  XXXXXXXXXXXQEKQVFEFEYLDDTV 86
                       +++VFEFEYLDD V
Sbjct: 102 SGSTSTNVSRQNQREVFEFEYLDDKV 127