Jatropha Genome Database
- JcCB0496181.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0496181.10 - phase: 0 /pseudo
(255 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME... 291 2e-79
AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca... 196 8e-51
AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca... 179 2e-45
>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
ISOMERASE); triose-phosphate isomerase |
chr3:20553794-20556078 FORWARD
Length = 254
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/218 (67%), Positives = 164/218 (75%), Gaps = 43/218 (19%)
Query: 1 MARKFFVGGNWKCNGTTEDVKKIVSTLNEGQVPSSDVVGRWNALISVSALCFASVNVLLC 60
MARKFFVGGNWKCNGT E+VKKIV+TLNE QVPS DVV
Sbjct: 1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVV---------------------- 38
Query: 61 IVFDIAVTVVNTRDLNLDDLKEVVISPPFVFLPLVKSSLRPDFHVAAQNCWVKKGGAFTG 120
EVV+SPP+VFLPLVKS+LR DF VAAQNCWVKKGGAFTG
Sbjct: 39 ---------------------EVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTG 77
Query: 121 EVSAEMLVNLAILWVILGHSERRLLLTESNEFVGDKVAYALSQGLKVIACVGETLEQREA 180
EVSAEMLVNL I WVILGHSERR +L ES+EFVGDKVAYAL+QGLKVIACVGETLE+REA
Sbjct: 78 EVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREA 137
Query: 181 GSTLEVVAAQTKAIAARIKNWTDVVLAYEPVWAIGTGE 218
GST++VVAAQTKAIA R+ NW++VV+AYEPVWAIGTG+
Sbjct: 138 GSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGK 175
>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
catalytic/ triose-phosphate isomerase |
chr2:9071047-9073106 REVERSE
Length = 315
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 129/215 (60%), Gaps = 45/215 (20%)
Query: 4 KFFVGGNWKCNGTTEDVKKIVSTLNEGQVPSSDVVGRWNALISVSALCFASVNVLLCIVF 63
KFFVGGNWKCNGT + + K++S LN SA A V+V
Sbjct: 65 KFFVGGNWKCNGTKDSIAKLISDLN-------------------SATLEADVDV------ 99
Query: 64 DIAVTVVNTRDLNLDDLKEVVISPPFVFLPLVKSSLRPDFHVAAQNCWVKKGGAFTGEVS 123
V+SPPFV++ VKSSL ++ QN WV KGGAFTGE+S
Sbjct: 100 --------------------VVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEIS 139
Query: 124 AEMLVNLAILWVILGHSERRLLLTESNEFVGDKVAYALSQGLKVIACVGETLEQREAGST 183
E L +L WVILGHSERR ++ E +EF+G K AYALS+GL VIAC+GE LE+REAG T
Sbjct: 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKT 199
Query: 184 LEVVAAQTKAIAARIKNWTDVVLAYEPVWAIGTGE 218
+V AQ KA A + +W ++V+AYEPVWAIGTG+
Sbjct: 200 FDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGK 234
>AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
catalytic/ triose-phosphate isomerase |
chr2:9071047-9073106 REVERSE
Length = 306
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 109/148 (73%), Gaps = 3/148 (2%)
Query: 74 DLNLDDLK---EVVISPPFVFLPLVKSSLRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNL 130
DLN L+ +VV+SPPFV++ VKSSL ++ QN WV KGGAFTGE+S E L +L
Sbjct: 78 DLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDL 137
Query: 131 AILWVILGHSERRLLLTESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTLEVVAAQ 190
WVILGHSERR ++ E +EF+G K AYALS+GL VIAC+GE LE+REAG T +V AQ
Sbjct: 138 GCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQ 197
Query: 191 TKAIAARIKNWTDVVLAYEPVWAIGTGE 218
KA A + +W ++V+AYEPVWAIGTG+
Sbjct: 198 LKAFADAVPSWDNIVVAYEPVWAIGTGK 225