Jatropha Genome Database

JcCB0495181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0495181.10 - phase: 0 
         (190 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60750.1 | Symbols:  | transketolase, putative | chr3:2245400...   191   2e-49
AT2G45290.1 | Symbols:  | transketolase, putative | chr2:1867273...   188   1e-48

>AT3G60750.1 | Symbols:  | transketolase, putative |
           chr3:22454004-22456824 FORWARD
          Length = 741

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/154 (61%), Positives = 107/154 (69%), Gaps = 10/154 (6%)

Query: 18  VSYYGSSQSSDHHRLSLSTPSLPAFSGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAS 77
           +S++GS Q            SLPAFSGLK                             A+
Sbjct: 18  ISHHGSDQRG----------SLPAFSGLKSTGSRASASSRRRIAQSMTKNRSLRPLVRAA 67

Query: 78  VVETVDATTETSLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPK 137
            VETV+ TT++S+V+KSVN+IRFLAIDAVEKA SGHPGLPMGCAPM HILYDEVM+YNPK
Sbjct: 68  AVETVEPTTDSSIVDKSVNSIRFLAIDAVEKAKSGHPGLPMGCAPMAHILYDEVMRYNPK 127

Query: 138 NPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVK 171
           NPYWFNRDRFVLSAGHGCML YALLHLAGYDSV+
Sbjct: 128 NPYWFNRDRFVLSAGHGCMLLYALLHLAGYDSVQ 161


>AT2G45290.1 | Symbols:  | transketolase, putative |
           chr2:18672737-18675589 FORWARD
          Length = 741

 Score =  188 bits (478), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 101/142 (71%)

Query: 30  HRLSLSTPSLPAFSGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVVETVDATTETS 89
           H  S +  S+PAFS LK                             A+ VE +  ++++S
Sbjct: 20  HNGSENCVSIPAFSALKSTSPRTSGTISSRRRNASTISHSLRPLVRAAAVEAIVTSSDSS 79

Query: 90  LVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVL 149
           LV+KSVNTIRFLAIDAVEKA SGHPGLPMGCAPM HILYDEVMKYNPKNPYWFNRDRFVL
Sbjct: 80  LVDKSVNTIRFLAIDAVEKAKSGHPGLPMGCAPMSHILYDEVMKYNPKNPYWFNRDRFVL 139

Query: 150 SAGHGCMLQYALLHLAGYDSVK 171
           SAGHGCMLQYALLHLAGYDSV+
Sbjct: 140 SAGHGCMLQYALLHLAGYDSVR 161