Jatropha Genome Database

JcCB0492761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492761.10 + phase: 0 
         (322 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04880.1 | Symbols: DRT102 | DRT102 (DNA-DAMAGE-REPAIR/TOLERA...   445   e-125

>AT3G04880.1 | Symbols: DRT102 | DRT102
           (DNA-DAMAGE-REPAIR/TOLERATION 2) | chr3:1346431-1347363
           REVERSE
          Length = 310

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/308 (68%), Positives = 246/308 (79%), Gaps = 12/308 (3%)

Query: 12  RPLKVITGADAYGCTLKDALVSHLRSLNIDVEDLGTSSYYSIAAEVGRRVSAANXXXXXX 71
           +PLK+ITGAD +G +LKDA+V+HLRSL IDVED G SSYYS  +EVGRRVSA++      
Sbjct: 10  QPLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSS---- 65

Query: 72  XXXEIRGLVACGTGVGVSIFANKFPGVFANTCLSTADAINTRSINNCNVLAVSGLATTPE 131
              E+RGLV CGTGVGV++FANKFPGV+A TCLS  DA+N RSI+NCNVLA SG+ T+PE
Sbjct: 66  ---EVRGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPE 122

Query: 132 SGIEILDAWLNTPFKAPCPAFGSTPYNEEISSFLDNSLVEMPKIGQEDKKEETS-----T 186
           + +EI DAW+ TPFK+PCPA GS P++  ISSFLDNSL EM +IG+    + T+     T
Sbjct: 123 TALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDET 182

Query: 187 LNPCALCCLVKNRKLDPIDIIPGGSMKIVRESPTSAFVSFKAGSVEPAHHHTFGHDLVVI 246
              C +CCL KNR+  P+DI+PGGSMKIVRE+PTSA V FKAGSVEPAHHHTFGHDLVVI
Sbjct: 183 TASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVVI 242

Query: 247 KGSKRVWNLSKKTKYDLVVGDYLFTPAGDVHRVKYFEDTEFFIKWEGQWDIFFDEDLEVA 306
           KG K VWNLSKK + DLV GDYLFTPAGDVHRVKY EDTEFFI W+G WDIF DEDLE A
Sbjct: 243 KGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFLDEDLETA 302

Query: 307 KSAIEKEA 314
           K AIE+EA
Sbjct: 303 KKAIEEEA 310