Jatropha Genome Database

JcCB0492351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492351.10 + phase: 1 /pseudo/partial
         (238 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43710.1 | Symbols: emb1075 | emb1075 (embryo defective 1075)...   451   e-127
AT1G65960.1 | Symbols: GAD2 | GAD2 (GLUTAMATE DECARBOXYLASE 2); ...    50   2e-06
AT1G65960.2 | Symbols: GAD2 | GAD2 (GLUTAMATE DECARBOXYLASE 2); ...    49   3e-06

>AT1G43710.1 | Symbols: emb1075 | emb1075 (embryo defective 1075);
           carboxy-lyase/ catalytic/ pyridoxal phosphate binding |
           chr1:16486534-16488298 REVERSE
          Length = 482

 Score =  451 bits (1161), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/233 (89%), Positives = 221/233 (94%)

Query: 1   WFARLWEIEKDQYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSVFKAARMYRM 60
           WFARLWEIE+D YWGYITNCGTEGNLHGILVGRE+ PDGILYASRESHYSVFKAARMYRM
Sbjct: 154 WFARLWEIERDDYWGYITNCGTEGNLHGILVGREMFPDGILYASRESHYSVFKAARMYRM 213

Query: 61  GCVKIDCLVSGEIDCADFKVKLLANKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFT 120
            C K+D L+SGEIDC D + KLLANKDKPAI+NVNIGTTVKGAVDDLDLVI+TLEE GF+
Sbjct: 214 ECEKVDTLMSGEIDCDDLRKKLLANKDKPAILNVNIGTTVKGAVDDLDLVIKTLEECGFS 273

Query: 121 HDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQLTRLEHIN 180
           HDRFYIHCDGALFGLMMPFVKRAPKV+F KPIGSVSVSGHKFVGCPMPCGVQ+TR+EHI 
Sbjct: 274 HDRFYIHCDGALFGLMMPFVKRAPKVTFNKPIGSVSVSGHKFVGCPMPCGVQITRMEHIK 333

Query: 181 VLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHY 233
           VLS NVEYLASRDATIMGSRNGHAP+FLWYTLNRKGY+GFQKEVQKCLRNAHY
Sbjct: 334 VLSSNVEYLASRDATIMGSRNGHAPLFLWYTLNRKGYKGFQKEVQKCLRNAHY 386


>AT1G65960.1 | Symbols: GAD2 | GAD2 (GLUTAMATE DECARBOXYLASE 2);
           calmodulin binding / glutamate decarboxylase |
           chr1:24555868-24557253 FORWARD
          Length = 365

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 96  IGTTVKGAVDDL----DLVIQTLEESGFTHDRFYIHCDGALFGLMMPFVKRAPKVSFKKP 151
           +G+T+ G  +D+    DL+++  EE+G+      IH D A  G + PF+    +  F+ P
Sbjct: 80  LGSTLNGEFEDVKRLNDLLVKKNEETGWNTP---IHVDAASGGFIAPFIYPELEWDFRLP 136

Query: 152 -IGSVSVSGHKFVGCPMPCGVQLTRLEH--INVLSRNVEYLASRDA--TIMGSRNGHAPI 206
            + S++VSGHK+       G  + R        L  ++ YL +     T+  S+     I
Sbjct: 137 LVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQII 196

Query: 207 FLWYTLNRKGYRGFQKEVQKCLRN 230
             +Y L R G+ G++  ++ C+ N
Sbjct: 197 AQYYQLIRLGFEGYKNVMENCIEN 220


>AT1G65960.2 | Symbols: GAD2 | GAD2 (GLUTAMATE DECARBOXYLASE 2);
           calmodulin binding / glutamate decarboxylase |
           chr1:24552094-24557253 FORWARD
          Length = 494

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 96  IGTTVKGAVDDL----DLVIQTLEESGFTHDRFYIHCDGALFGLMMPFVKRAPKVSFKKP 151
           +G+T+ G  +D+    DL+++  EE+G+      IH D A  G + PF+    +  F+ P
Sbjct: 209 LGSTLNGEFEDVKRLNDLLVKKNEETGWNTP---IHVDAASGGFIAPFIYPELEWDFRLP 265

Query: 152 -IGSVSVSGHKFVGCPMPCGVQLTRLEH--INVLSRNVEYLASRDA--TIMGSRNGHAPI 206
            + S++VSGHK+       G  + R        L  ++ YL +     T+  S+     I
Sbjct: 266 LVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQII 325

Query: 207 FLWYTLNRKGYRGFQKEVQKCLRN 230
             +Y L R G+ G++  ++ C+ N
Sbjct: 326 AQYYQLIRLGFEGYKNVMENCIEN 349