Jatropha Genome Database

JcCB0489751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0489751.10 + phase: 2 /partial
         (261 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465...    91   8e-19
AT2G25050.1 | Symbols:  | formin homology 2 domain-containing pr...    86   3e-17
AT3G32400.1 | Symbols:  | formin homology 2 domain-containing pr...    84   1e-16
AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761...    69   3e-12
AT5G07770.1 | Symbols:  | formin homology 2 domain-containing pr...    61   8e-10
AT5G07650.1 | Symbols:  | formin homology 2 domain-containing pr...    57   1e-08
AT5G07780.1 | Symbols:  | formin homology 2 domain-containing pr...    48   6e-06

>AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465
           FORWARD
          Length = 1324

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 68/118 (57%), Gaps = 34/118 (28%)

Query: 175 KGRLSRTISSRSNQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASK-------------- 220
           KGR+ R ++ +++  KKLKP HWLKLTRAV GSLWAE Q S EASK              
Sbjct: 823 KGRMLR-VNLKNSPAKKLKPYHWLKLTRAVNGSLWAETQMSSEASKYALFILLSLISLMP 881

Query: 221 -----------------APEIDLSELENLFSASVPNSDHGRKSRIHSSRGRKAEKVQL 261
                            AP+ID++ELE+LFSAS P  +   KSR+ SSRG K EKVQL
Sbjct: 882 PDSCMISNSLILYLLVRAPDIDMTELESLFSASAP--EQAGKSRLDSSRGPKPEKVQL 937


>AT2G25050.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr2:10654108-10659383 REVERSE
          Length = 1111

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 54/77 (70%), Gaps = 3/77 (3%)

Query: 188 QTKK--LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPNSDHGRK 245
           QT+K  LKP HWLKLTRAVQGSLWAEAQKS EA+ AP+ D+SELE LFSA   +SD    
Sbjct: 706 QTRKANLKPYHWLKLTRAVQGSLWAEAQKSDEAATAPDFDISELEKLFSAVNLSSDSENN 765

Query: 246 SRIHSSRGR-KAEKVQL 261
                 R R K EKVQL
Sbjct: 766 GGKSGRRARPKVEKVQL 782


>AT3G32400.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr3:13356995-13360572 REVERSE
          Length = 488

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 58/80 (72%), Gaps = 9/80 (11%)

Query: 188 QTKK--LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSA---SVPNSDH 242
           QT+K  LKP HWLKLTRAVQGSLWAEAQKS EA+ AP+ D+SE+E LFSA   S  + ++
Sbjct: 82  QTRKANLKPYHWLKLTRAVQGSLWAEAQKSDEAATAPDFDISEIEKLFSAVNLSSNSENN 141

Query: 243 GRKSRIHSSRGR-KAEKVQL 261
           G KS     R R K EKVQL
Sbjct: 142 GGKS---GRRARPKVEKVQL 158


>AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761
           REVERSE
          Length = 1230

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 192 LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPNSDHGRKSRIHSS 251
           LKPLHW K+TRA +GSLWA+ QK     +APEID+SELE+LFSA V ++   + +    S
Sbjct: 819 LKPLHWSKVTRAAKGSLWADTQKQENQPRAPEIDISELESLFSA-VSDTTAKKSTGRRGS 877

Query: 252 RGRKAEKVQL 261
              K EKVQL
Sbjct: 878 SISKPEKVQL 887


>AT5G07770.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2474816-2479022 FORWARD
          Length = 722

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 185 RSNQTKK--LKPLHWLKLTRAVQGSLWAEAQ-KSGEASKAPEIDLSELENLFSA 235
           R   TK+  LKPLHW+K+TRA+QGSLW E Q + GE+  A E+D+ E+E LFS 
Sbjct: 183 RCPVTKRSSLKPLHWVKITRALQGSLWDELQIQYGESQTAIELDVPEIETLFSV 236


>AT5G07650.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2416375-2421814 REVERSE
          Length = 815

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 192 LKPLHWLKLTRAVQGSLWAEAQ-KSGEASKAPEIDLSELENLFSASVPNSDHGRKSRIHS 250
           LKPLHW+K+T  +QGSLW E Q + G++  A E+D+SELE LF           K R+H 
Sbjct: 62  LKPLHWVKITSDLQGSLWDELQRRHGDSQTAIELDISELETLFFVEA----KPEKIRLHD 117

Query: 251 SR 252
            R
Sbjct: 118 LR 119


>AT5G07780.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2479707-2482638 FORWARD
          Length = 464

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 9/61 (14%)

Query: 183 SSRSNQTK-KLKPLHWLKLTRAVQGSLWAEAQKSGEASK--------APEIDLSELENLF 233
            SR  +TK  LKPLHW+K TRA+ GSLW E Q+  E           A E+ +SE+E +F
Sbjct: 68  CSRPPKTKCSLKPLHWVKKTRALPGSLWDELQRRQECRDIEDEQILCAIELSVSEIETIF 127

Query: 234 S 234
           S
Sbjct: 128 S 128