Jatropha Genome Database

JcCB0488391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0488391.10 - phase: 0 /partial
         (111 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07830.1 | Symbols:  | ribosomal protein L29 family protein |...   147   1e-36

>AT1G07830.1 | Symbols:  | ribosomal protein L29 family protein |
           chr1:2422549-2423392 FORWARD
          Length = 144

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 81/115 (70%), Gaps = 4/115 (3%)

Query: 1   MFMTRFIGRTLFXXXXXXXXXXXXXT----IQFARNPLEEFFEADRSQDEDNKIFYGRSW 56
           MF+TRF+GR                     I+   NPLEEFFE DRSQDED  + YGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 57  KASELRLKSWDDLQKLWYVMLKEKNMLMTQRQMLHAQNLRFPNPERLPKVELSFS 111
           KASELRLKSWDDLQKLWYV+LKEKNMLMTQRQML AQN++FPNPER+PKV  S  
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMC 115