Jatropha Genome Database

JcCB0487041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0487041.10 - phase: 0 /pseudo
         (128 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26240.1 | Symbols:  | unknown protein | chr4:13287011-132888...    87   3e-18

>AT4G26240.1 | Symbols:  | unknown protein | chr4:13287011-13288896
           REVERSE
          Length = 198

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 65/111 (58%), Gaps = 2/111 (1%)

Query: 1   MKKLARNWRKSHEEKXXXX-XXXXXXXXXXXXXXXEEQEELVRSLERTQAEQSLFWRRVF 59
           MKKLAR WR++  ++                    +EQEE VR LE   A+QSL WR VF
Sbjct: 1   MKKLARKWRRTRRDEDDDKFVLPTSEDVDSRPIDTQEQEEYVRYLEEAHAQQSLQWRSVF 60

Query: 60  AGFLFSYAVFQLYSIYQMATSPWELRYQAYFMEDMESWMVISAG-LPLLAC 109
              L  +  F  YSI+Q   SPWELRY AYFMED++SWMVISA  + ++AC
Sbjct: 61  VVLLICFGAFLFYSIFQQFMSPWELRYHAYFMEDLKSWMVISAEWIAIMAC 111