Jatropha Genome Database

JcCB0480341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0480341.10 - phase: 0 /partial
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34710.2 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECAR...    82   7e-17
AT4G34710.1 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECAR...    82   7e-17
AT2G16500.1 | Symbols: ADC1, ARGDC1, ARGDC, SPE1 | ADC1 (ARGININ...    76   5e-15

>AT4G34710.2 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE
          DECARBOXYLASE 2); arginine decarboxylase |
          chr4:16560315-16562450 REVERSE
          Length = 711

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 17/98 (17%)

Query: 1  MPALACCVDAALAPPGYA--NHAGDSSLQSSILFSGVXXXXXXXXXXXIDNSPFSHWSPS 58
          MPALAC VD +  PP YA  + AGD  + +S                 +D      WSPS
Sbjct: 1  MPALAC-VDTSFVPPAYAFSDTAGDVFIPAS---------SPTSAAVVVDR-----WSPS 45

Query: 59 LSAALYKIDGWGAPYFSVNSSGNIAVHPYGTDTLAHQE 96
          LS++LY+IDGWGAPYF  NSSGNI+V P+G++TL HQ+
Sbjct: 46 LSSSLYRIDGWGAPYFIANSSGNISVRPHGSETLPHQD 83


>AT4G34710.1 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE
          DECARBOXYLASE 2); arginine decarboxylase |
          chr4:16560315-16562450 REVERSE
          Length = 711

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 17/98 (17%)

Query: 1  MPALACCVDAALAPPGYA--NHAGDSSLQSSILFSGVXXXXXXXXXXXIDNSPFSHWSPS 58
          MPALAC VD +  PP YA  + AGD  + +S                 +D      WSPS
Sbjct: 1  MPALAC-VDTSFVPPAYAFSDTAGDVFIPAS---------SPTSAAVVVDR-----WSPS 45

Query: 59 LSAALYKIDGWGAPYFSVNSSGNIAVHPYGTDTLAHQE 96
          LS++LY+IDGWGAPYF  NSSGNI+V P+G++TL HQ+
Sbjct: 46 LSSSLYRIDGWGAPYFIANSSGNISVRPHGSETLPHQD 83


>AT2G16500.1 | Symbols: ADC1, ARGDC1, ARGDC, SPE1 | ADC1 (ARGININE
          DECARBOXYLASE 1); arginine decarboxylase |
          chr2:7150796-7152904 REVERSE
          Length = 702

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 40/43 (93%)

Query: 54 HWSPSLSAALYKIDGWGAPYFSVNSSGNIAVHPYGTDTLAHQE 96
          HWSPSLS++LY+IDGWGAPYF+ NSSGNI+V P+G++TL HQ+
Sbjct: 33 HWSPSLSSSLYRIDGWGAPYFAANSSGNISVRPHGSNTLPHQD 75