Jatropha Genome Database

JcCB0477181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0477181.10 + phase: 0 /partial
         (126 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26000.1 | Symbols:  | F-box family protein | chr3:9507042-95...   139   3e-34
AT3G27290.1 | Symbols:  | F-box family protein-related | chr3:10...   103   3e-23
AT2G01620.1 | Symbols: MEE11 | MEE11 (maternal effect embryo arr...    70   2e-13

>AT3G26000.1 | Symbols:  | F-box family protein |
           chr3:9507042-9508542 REVERSE
          Length = 453

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 92/126 (73%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           NEKIT++ LL LT RAQG +QCL +++C RITDD LK V+  N ++ K+ VPGCTR++I+
Sbjct: 247 NEKITEEALLHLTERAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITID 306

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSDNHMQQNTYKPHYYHRGN 120
           GI++ L+  +S G   VKHL++ GL+GVT+ H++EL  LL  DN ++Q   KP +YHRG 
Sbjct: 307 GILSVLRDLKSAGKLQVKHLQLRGLFGVTKDHYDELIDLLNIDNKVKQTIQKPRFYHRGE 366

Query: 121 FYLSCE 126
             +SC+
Sbjct: 367 ACVSCD 372


>AT3G27290.1 | Symbols:  | F-box family protein-related |
           chr3:10080038-10081265 REVERSE
          Length = 382

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

Query: 3   KITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIEGI 62
           ++TD+ LL+LT RA G ++CL+L  C  ITD GLK VL +NP LTKLSV GC RLS  G+
Sbjct: 177 RVTDESLLKLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGL 236

Query: 63  VTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSDNHMQQNTYKPHYYH--RGN 120
           V++L+  +S    GVK L  GG    T++ F+EL  LLG D  +     K  +Y   R  
Sbjct: 237 VSTLRDLKSSNRLGVKSLITGGALYFTKEQFKELNLLLGGDAKVGLQERKKRFYTSCRSE 296

Query: 121 FYL 123
           FYL
Sbjct: 297 FYL 299


>AT2G01620.1 | Symbols: MEE11 | MEE11 (maternal effect embryo arrest
           11) | chr2:278204-279226 FORWARD
          Length = 292

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           + ++TDDIL + ++++ G L+ L L +C  +T+ GL+ V++ NP +TK+ VPGC+ L+ E
Sbjct: 64  SSRLTDDILSEFSSKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPE 123

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSD 103
           GI+  +++  S     ++ L I G+ G T++H   L   L S+
Sbjct: 124 GIMECVESL-SKNNHKLETLHINGVNGFTKQHLSALYTYLSSE 165