Jatropha Genome Database

JcCB0477071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0477071.10 + phase: 1 /partial
         (231 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18090.1 | Symbols: NRPD2B | NRPD2b; DNA binding / DNA-direct...   249   7e-67
AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A...   247   4e-66
AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | NRPB2; DNA binding...    94   8e-20
AT5G45140.1 | Symbols: NRPC2 | NRPC2; DNA binding / DNA-directed...    67   1e-11

>AT3G18090.1 | Symbols: NRPD2B | NRPD2b; DNA binding / DNA-directed
           RNA polymerase/ ribonucleoside binding |
           chr3:6195323-6200204 FORWARD
          Length = 1055

 Score =  249 bits (637), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 155/219 (70%), Gaps = 6/219 (2%)

Query: 14  GRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDTHTKLDEKYKV 72
           GR+  L T  GENCGLVKN+++ GLVST+ LE ++++LF CGM++L++DT T L  K+KV
Sbjct: 397 GRVCFLSTPDGENCGLVKNMSLLGLVSTQGLESVVEMLFTCGMEELMNDTSTPLCGKHKV 456

Query: 73  FLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVV 132
            LNG+WVG+C DS  FV E            ++EIKRD+   EVRIF DAGR+LRPLLVV
Sbjct: 457 LLNGDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVV 516

Query: 133 ENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPLKYTHC 192
           ENLHK+K  K   Y F+ LLD+            DC+TAWGIK L+     K+P  YTHC
Sbjct: 517 ENLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLL-----KEPKNYTHC 571

Query: 193 ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
           ELD+SFLLG+SC I+PFANHDH +RVLYQ+QKH QQAIG
Sbjct: 572 ELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIG 610


>AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A;
           DNA binding / DNA-directed RNA polymerase |
           chr3:8567971-8573819 REVERSE
          Length = 1172

 Score =  247 bits (631), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 157/229 (68%), Gaps = 9/229 (3%)

Query: 7   DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
           D+R+   S  GR+  L T  GENCGLVKN+++ GLVST+ LE +++ LF CGM++L+DDT
Sbjct: 505 DARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFACGMEELMDDT 564

Query: 63  HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
            T L  K+KV LNG+WVG+C DS  FVAE            ++EIKRD+   EVRIF DA
Sbjct: 565 CTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDA 624

Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
           GR+LRPLLVVENL K+K  K   Y F  LLD             DC+TAWGIK L+    
Sbjct: 625 GRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLL---- 680

Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
            K+P  YTHCELD+SFLLG+SC ++PFANHDH RRVLYQ+QKH QQAIG
Sbjct: 681 -KEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIG 728


>AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | NRPB2; DNA binding /
           DNA-directed RNA polymerase | chr4:11535684-11542200
           REVERSE
          Length = 1188

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 17/224 (7%)

Query: 23  GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
           G+ CGLVKNLA+   ++      P+++ L + G +   + + + + +  K+F+NG WVGV
Sbjct: 521 GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGV 580

Query: 82  CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAF 141
             D ++ V              +V + RD + KE+RI+ D GR  RPL +V+N  K+   
Sbjct: 581 HRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDN-QKLLIK 639

Query: 142 KGGNYTFQS-----------LLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVDKKQPL--- 187
           K   Y  Q            L+ K                +  I  LV    + +     
Sbjct: 640 KRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTE 699

Query: 188 KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
            YTHCE+  S +LG+   IIPF +H+ + R  YQ+    +QA+G
Sbjct: 700 NYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 742


>AT5G45140.1 | Symbols: NRPC2 | NRPC2; DNA binding / DNA-directed
           RNA polymerase/ ribonucleoside binding |
           chr5:18247416-18257713 REVERSE
          Length = 1161

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)

Query: 23  GENCGLVKNLAITGLVSTEILE-PLIDILFDCGMDKL----VDDTHTKLDEKYKVFLNGE 77
           GE+CGLVKNLA+   V+T+  E PL+ + +  G+  L     ++ HT   + + V LNG 
Sbjct: 498 GESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTP--DSFLVILNGL 555

Query: 78  WVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVEN--- 134
            +G       F                V +  +E+Q  V + +D GR+ RPL++ +    
Sbjct: 556 ILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGIS 615

Query: 135 ---LHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAW----GIKFLVAGVDKKQPL 187
               H +K  + G  TF   +              +   A     G   L  G +  +  
Sbjct: 616 RVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAK-A 674

Query: 188 KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
             TH E++   +LG+  G+IP+ +H+ + R  YQ     +QA+G
Sbjct: 675 DTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCA-MGKQAMG 717