Jatropha Genome Database

JcCB0471851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0471851.10 + phase: 0 /partial
         (156 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14630.1 | Symbols:  | unknown protein | chr1:5019995-5021445...    49   9e-07
AT2G01990.1 | Symbols:  | unknown protein | chr2:465197-466497 R...    49   2e-06

>AT1G14630.1 | Symbols:  | unknown protein | chr1:5019995-5021445
           FORWARD
          Length = 226

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 8/58 (13%)

Query: 17  TGYLEDALLEFSERSKRRRLLLYTGDHHQIKKSNDHLAKSYCNANYDWEMSENFSCMS 74
           TGYLEDAL+EFS RSKRRR L + G   +     DH       +   W +SEN+SC S
Sbjct: 52  TGYLEDALIEFSGRSKRRR-LSFNGAEDKPDNDLDH-------SQNHWGLSENYSCTS 101


>AT2G01990.1 | Symbols:  | unknown protein | chr2:465197-466497
          REVERSE
          Length = 213

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 12/67 (17%)

Query: 17 TGYLEDALLEFSERSKRRRLLLYTGDHHQIKKSNDHLAKSYCNANYDWEMSENFSCMS-- 74
          TGYLEDAL+E  ERSKRRRLL         K  ND       ++  DW + E++SC++  
Sbjct: 21 TGYLEDALIESGERSKRRRLLF----EDPSKSFNDD------DSQNDWGLHESYSCLNSQ 70

Query: 75 YITSSIN 81
          ++T  +N
Sbjct: 71 FVTPHVN 77