Jatropha Genome Database

JcCB0469141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469141.10 + phase: 2 /pseudo/partial
         (99 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32700.6 | Symbols: LUH | WD-40 repeat family protein | chr2:...    60   3e-10
AT2G32700.2 | Symbols: LUH | WD-40 repeat family protein | chr2:...    60   3e-10
AT2G32700.1 | Symbols: LUH | WD-40 repeat family protein | chr2:...    60   3e-10
AT2G32700.4 | Symbols: LUH | WD-40 repeat family protein | chr2:...    60   3e-10
AT2G32700.5 | Symbols: LUH | WD-40 repeat family protein | chr2:...    60   3e-10
AT2G32700.3 | Symbols: LUH | WD-40 repeat family protein | chr2:...    60   3e-10

>AT2G32700.6 | Symbols: LUH | WD-40 repeat family protein |
           chr2:13867235-13871844 FORWARD
          Length = 785

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180


>AT2G32700.2 | Symbols: LUH | WD-40 repeat family protein |
           chr2:13867235-13871844 FORWARD
          Length = 787

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180


>AT2G32700.1 | Symbols: LUH | WD-40 repeat family protein |
           chr2:13867235-13871844 FORWARD
          Length = 787

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180


>AT2G32700.4 | Symbols: LUH | WD-40 repeat family protein |
           chr2:13867235-13871844 FORWARD
          Length = 787

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180


>AT2G32700.5 | Symbols: LUH | WD-40 repeat family protein |
           chr2:13867235-13871844 FORWARD
          Length = 787

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180


>AT2G32700.3 | Symbols: LUH | WD-40 repeat family protein |
           chr2:13867235-13871844 FORWARD
          Length = 787

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGN 37
           +K  NPM+SETSQP LDARM LLK ATNH GQ+VQGN
Sbjct: 144 MKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGN 180