Jatropha Genome Database

JcCB0469081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469081.10 + phase: 0 /pseudo/partial
         (207 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57030.1 | Symbols:  | strictosidine synthase family protein ...    48   3e-06

>AT3G57030.1 | Symbols:  | strictosidine synthase family protein |
           chr3:21101653-21103204 REVERSE
          Length = 374

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 102 NINLAPDGSFWIGLLQLTSDWLKFVHTSKLSKHLVASFP----KLIELVTGLRKKAMVVN 157
           NI    +G FW+ L      + K   T    + LV   P    +L  L TG    A  + 
Sbjct: 268 NIRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPISPQRLHSLFTGGIPHATAIK 327

Query: 158 VAADGRIIRMFDDPVGKVMSFVTSAFEFDGYLYLGSLNTNFIG 200
           ++  G+++ + +D  GK + F++   E DG L++GS+   F+G
Sbjct: 328 LSESGKVLEVLEDKEGKTLRFISEVEEKDGKLWIGSVLVPFLG 370