Jatropha Genome Database

JcCB0467621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467621.10 - phase: 1 /TE/pseudo/partial
         (119 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37590.1 | Symbols:  | binding | chr5:14927403-14932709 REVERSE    113   2e-26

>AT5G37590.1 | Symbols:  | binding | chr5:14927403-14932709 REVERSE
          Length = 547

 Score =  113 bits (283), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/68 (73%), Positives = 61/68 (89%)

Query: 32  LRKIEDGSVISNEHTSKWRIFTDNGREYFVQGKLEQAEKFFFSALEEAKKGFGDRDPHVA 91
           L KIEDGSV+SN HTSKWR+FTD+GR+YF QGKLE AE+ F SA++EAK+GFG++DPHVA
Sbjct: 103 LEKIEDGSVVSNIHTSKWRVFTDSGRDYFFQGKLEPAERLFGSAIQEAKEGFGEKDPHVA 162

Query: 92  SACNNLGK 99
           SACNNL +
Sbjct: 163 SACNNLAE 170