Jatropha Genome Database
- JcCB0466931.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0466931.10 + phase: 0 /pseudo/partial
(393 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 363 e-100
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 322 3e-88
AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);... 143 2e-34
ATMG00940.1 | Symbols: ORF164 | hypothetical protein | chrM:2514... 94 1e-19
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 87 2e-17
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 83 3e-16
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 83 3e-16
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 82 4e-16
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 82 4e-16
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 81 1e-15
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 80 2e-15
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 80 2e-15
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 80 2e-15
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 80 2e-15
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 79 6e-15
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 79 7e-15
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 71 1e-12
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 71 1e-12
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 71 1e-12
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 70 2e-12
AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding / tr... 69 4e-12
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 66 3e-11
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 66 3e-11
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 66 4e-11
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 66 5e-11
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 65 6e-11
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 65 1e-10
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 60 3e-09
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 59 5e-09
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 58 9e-09
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 57 2e-08
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 57 2e-08
AT1G34170.1 | Symbols: ARF13 | transcription factor | chr1:12444... 55 1e-07
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 53 3e-07
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/388 (54%), Positives = 250/388 (64%), Gaps = 24/388 (6%)
Query: 12 DMKGKVRAESVIQAATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKM 71
D KGKV AESVI+AATLA +G+PF+ VYYPRAST EFCVKA RAAM+I WC GMRFKM
Sbjct: 266 DRKGKVTAESVIEAATLAISGRPFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKM 325
Query: 72 AFETEDSSRISWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELV 131
AFETEDSSRISWFMGT+S+V V+DPIRWP+SPWRLLQVAWDEPDLLQNVK V+PWLVELV
Sbjct: 326 AFETEDSSRISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELV 385
Query: 132 SNMPAIHLSPFSXXXXXXXXXXXXDF-PLLGHFPMPSFTSNPLNSNSPLCCVSDNIPAGI 190
SN+ I L+ FS D+ L+ P+PSF SNPL +SPL V DN+P G+
Sbjct: 386 SNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPSFPSNPLIRSSPLSSVLDNVPVGL 445
Query: 191 QGAR---HAQYGLSSADLHFNKLQSSPFPVGFQQLDCAAQFSRIPSCKVLGNTENNDDIS 247
QGAR H YGLSS+DLH L + PS + N+
Sbjct: 446 QGARHNAHQYYGLSSSDLHHYYLNRP------PPPPPPSSLQLSPSLGLRNIDTKNEKGF 499
Query: 248 CLLTMGNPTTASSKENSETKTPHILLFGQLIFTDQQSFQXXXXXXXXXXXXXXXPEKMIN 307
C LTMG +K +K HI+LFG+LI ++Q + +
Sbjct: 500 CFLTMGTTPCNDTK----SKKSHIVLFGKLILPEEQLSEKGSTDTANI--------EKTQ 547
Query: 308 LSDGPVSAFHQAIPLENSSDEGSPWYQKT-DLS-LETGHCKVFRESDDLGRTLDLSVFGS 365
+S G + A +SSDEGSP +K D S LETGHCKVF ESDD+GRTLDLSV GS
Sbjct: 548 ISSGGSNQNGVAGREFSSSDEGSPCSKKVHDASGLETGHCKVFMESDDVGRTLDLSVLGS 607
Query: 366 YEELYGKLANMFGVKRSDMFSSVLYRDA 393
YEEL KL++MFG+K+S+M SSVLYRDA
Sbjct: 608 YEELSRKLSDMFGIKKSEMLSSVLYRDA 635
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 193/375 (51%), Positives = 226/375 (60%), Gaps = 39/375 (10%)
Query: 32 GQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSV 91
GQ F+ VYYPRASTPEFCVKA+ VR+AM+I+WC GMRFKMAFETEDSSRISWFMGT+S+V
Sbjct: 284 GQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAV 343
Query: 92 QVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPFSXXXXXXXX 151
QVADPIRWP+SPWRLLQVAWDEPDLLQNVK VSPWLVELVSNMP IHLSPFS
Sbjct: 344 QVADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFS-PRKKIRI 402
Query: 152 XXXXDFPLLG-HFPM--PSFTSNPLNSNSPLCCVS---DNIPAGIQGARHAQYGLSSADL 205
+FP G FP+ P F +N +C +S +N PAGIQGAR AQ S
Sbjct: 403 PQPFEFPFHGTKFPIFSPGFANN--GGGESMCYLSNDNNNAPAGIQGARQAQQLFGSPSP 460
Query: 206 HFNKLQSSPFPVGFQQLDCAAQF--SRIPSCKVL--GNTENNDDISCLLTMGNPTTASSK 261
+ G +L A F S P ++EN+++ISC LTMGNP K
Sbjct: 461 SLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQARDSENSNNISCSLTMGNPAMVQDK 520
Query: 262 ENS--ETKTPHILLFGQLIFTDQQSFQXXXXXXXXXXXXXXXPEKMINLSDGPVSAFHQA 319
+ S KT +LFGQ I T+QQ E G V+
Sbjct: 521 KKSVGSVKTHQFVLFGQPILTEQQVMNRKRFLEE---------EAEAEEEKGLVA----- 566
Query: 320 IPLENSSDEGSPWYQKTDLSLETGHCKVFRESDDLGRTLDLSVFGSYEELYGKLANMFGV 379
G W LETGHCKVF ES+D+GRTLDLSV GSY+ELY KLA MF +
Sbjct: 567 --------RGLTWNYSLQ-GLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHI 617
Query: 380 -KRSDMFSSVLYRDA 393
+RSD+ + V+YRDA
Sbjct: 618 EERSDLLTHVVYRDA 632
>AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);
transcription factor | chr1:29272405-29275193 FORWARD
Length = 585
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 137/285 (48%), Gaps = 26/285 (9%)
Query: 15 GKVRAESVIQAATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFE 74
GK+ AE+V A A+ G PF+ V+YP A EF V+A V ++M + W PG R KMA E
Sbjct: 264 GKLTAEAVTDAINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAME 323
Query: 75 TEDSSRISWFMGTISSV-QVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSN 133
TEDSSRI+WF G +SS Q P W SPW+ LQ+ WDEP++LQNVK V+PW VE+ ++
Sbjct: 324 TEDSSRITWFQGIVSSTYQETGP--WRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAH 381
Query: 134 MPAIHLSPFSXXXXXXXXXXXXDFPLLGH-----FPMPSFTSNPLNSNSPLCCVSDNIPA 188
+H +PF F L G +P +S SP PA
Sbjct: 382 ATQLH-TPFPPAKRLKYPQPGGGF-LSGDDGEILYPQSGLSSAAAPDPSPSMFSYSTFPA 439
Query: 189 GIQGARHAQYGL---------SSADLHFNKLQSSPFPVGFQQLDCAAQFSRIPSCKVLGN 239
G+QGAR +G + L N SP P + F PS + N
Sbjct: 440 GMQGARQYDFGSFNPTGFIGGNPPQLFTNNFL-SPLPDLGKVSTEMMNFGSPPSDNLSPN 498
Query: 240 TENNDDISCLLTMGNPTTASSKENSETKTPHILLFGQLIFTDQQS 284
+ + S +GN S K NS I LFG++I ++ S
Sbjct: 499 SNTTNLSSGNDLVGNRGPLSKKVNS------IQLFGKIITVEEHS 537
>ATMG00940.1 | Symbols: ORF164 | hypothetical protein |
chrM:251403-251897 REVERSE
Length = 164
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 14 KGKVRAESVIQAATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAF 73
KGK+ AE+V +A AA G PF+ VYYP A +F VKA V A+M I W PG R KMA
Sbjct: 59 KGKLTAEAVSEAINRAAQGLPFEVVYYPTAGWSDFVVKAEDVEASMAIFWTPGTRVKMAM 118
Query: 74 ETEDSSRISWFMGTI-SSVQVADPIRWPSSPW 104
ETEDSSRI+WF G + + Q P W SPW
Sbjct: 119 ETEDSSRITWFQGIVFYTYQETGP--WRGSPW 148
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 31 NGQPFDAVYYPRASTPEFCVKASAVRAAM-QIQWCPGMRFKMAFETEDSSRISWFMGTIS 89
N PF Y PRA EF + + R A+ Q GMRF M FETEDS + +MGTI
Sbjct: 290 NRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGK-RRYMGTIV 348
Query: 90 SVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
+ DP+RWP S WR LQV WDEP VSPW +E
Sbjct: 349 GISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE 388
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 35 FDAVYYPRASTPEFCVKASA-VRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQV 93
F ++PRAS EF ++ S ++A + GMRF+M FETE+SS + +MGTI+ +
Sbjct: 262 FTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESS-VRRYMGTITGISD 320
Query: 94 ADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMP 135
D +RWP+S WR ++V WDE + VS W +E ++ P
Sbjct: 321 LDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP 362
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 35 FDAVYYPRASTPEFCVKASA-VRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQV 93
F ++PRAS EF ++ S ++A + GMRF+M FETE+SS + +MGTI+ +
Sbjct: 262 FTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESS-VRRYMGTITGISD 320
Query: 94 ADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMP 135
D +RWP+S WR ++V WDE + VS W +E ++ P
Sbjct: 321 LDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP 362
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 34 PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQV 93
PF + PRAS EF V + A+ Q GMRF+M FETED + +MGT++ +
Sbjct: 261 PFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCG-VRRYMGTVTGISD 319
Query: 94 ADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELV 131
DP+RW S WR LQV WDE VS W +E V
Sbjct: 320 LDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPV 357
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1164
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 34 PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQV 93
PF Y PRA+ EF V + AM Q GMRF+M FETE+ + +MGT++ +
Sbjct: 262 PFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGISD 320
Query: 94 ADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
DP+RW +S WR LQ+ WDE VS W +E V L+PF
Sbjct: 321 LDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPV-------LTPF 362
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 35 FDAVYYPRASTPEFCVK-ASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQV 93
F Y PRAS EF + A V+A + GMRF+M FETE+SS + +MGTI+ +
Sbjct: 263 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESS-VRRYMGTITGICD 321
Query: 94 ADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
DP RW +S WR ++V WDE + VS W +E ++ P ++ SPF
Sbjct: 322 LDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP-MYPSPF 369
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 35 FDAVYYPRASTPEFCVK-ASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQV 93
F Y PRAS EF + A V+A + GMRF+M FETE+SS + +MGTI+ +
Sbjct: 265 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESS-VRRYMGTITGICD 323
Query: 94 ADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
DP RW +S WR ++V WDE + VS W +E ++ P ++ SPF
Sbjct: 324 LDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP-MYPSPF 371
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 30 ANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTIS 89
+ G F Y PR S EF V +++ + GMRFKM FE E++ F GTI
Sbjct: 295 STGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE-QRFTGTIV 353
Query: 90 SVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
++ +DP RWP S WR L+V WDE + VSPW VE PA+ P
Sbjct: 354 GIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPM 406
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 30 ANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTIS 89
+ G F Y PR S EF V +++ + GMRFKM FE E++ F GTI
Sbjct: 295 STGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE-QRFTGTIV 353
Query: 90 SVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
++ +DP RWP S WR L+V WDE + VSPW VE PA+ P
Sbjct: 354 GIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPM 406
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 30 ANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTIS 89
+ G F Y PR S EF V +++ + GMRFKM FE E++ F GTI
Sbjct: 295 STGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE-QRFTGTIV 353
Query: 90 SVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
++ +DP RWP S WR L+V WDE + VSPW VE PA+ P
Sbjct: 354 GIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPM 406
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1165
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 34 PFDAVYYPRASTP-EFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQ 92
PF Y PR + P EF V + AM Q GMRF+M FETE+ + +MGT++ +
Sbjct: 262 PFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGIS 320
Query: 93 VADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
DP+RW +S WR LQ+ WDE VS W +E V L+PF
Sbjct: 321 DLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPV-------LTPF 363
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 34 PFDAVYYPRASTP-EFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQ 92
PF Y PR + P EF V + AM Q GMRF+M FETE+ + +MGT++ +
Sbjct: 262 PFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGIS 320
Query: 93 VADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPF 142
DP+RW +S WR LQ+ WDE VS W +E V L+PF
Sbjct: 321 DLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPV-------LTPF 363
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 25 AATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWF 84
AA G F Y PR S EF V + A + GMRFKM FE E++ F
Sbjct: 250 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPE-KRF 308
Query: 85 MGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE-LVSN 133
GTI VQ W S WR L+V WDEP + + VSPW +E LV+N
Sbjct: 309 SGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVAN 358
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 25 AATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWF 84
AA G F Y PR S EF V + A + GMRFKM FE E++ F
Sbjct: 250 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPE-KRF 308
Query: 85 MGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE-LVSN 133
GTI VQ W S WR L+V WDEP + + VSPW +E LV+N
Sbjct: 309 SGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVAN 358
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 25 AATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWF 84
AA G F Y PR S EF V + A + GMRFKM FE E++ F
Sbjct: 250 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPE-KRF 308
Query: 85 MGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE-LVSN 133
GTI VQ W S WR L+V WDEP + + VSPW +E LV+N
Sbjct: 309 SGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVAN 358
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 35 FDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQVA 94
F Y PRA+ EF + +++ C G RF+M FE +DS G ++ V
Sbjct: 312 FHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPE-RRCAGVVTGVCDL 370
Query: 95 DPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLS 140
DP RWP+S WR L V WDE + + + VSPW ++ ++P HLS
Sbjct: 371 DPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLP--HLS 414
>AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding /
transcription factor | chr2:14325444-14328613 REVERSE
Length = 608
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 35 FDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQVA 94
F Y P+AS F + A + +C GMRFK E+ED+S G IS +
Sbjct: 295 FSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASE-RRSPGIISGISDL 353
Query: 95 DPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
DPIRWP S WR L V WD+ + + VSPW +E
Sbjct: 354 DPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 388
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 22 VIQAATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRI 81
V+ A A + VYY + T +F + + AM ++ GMRFKM FE EDS
Sbjct: 238 VLATARHATQTKTMFIVYY-KPRTSQFIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPER 296
Query: 82 SWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
+ GT+ V+ P W S WR L+V WDEP + VSPW +E
Sbjct: 297 R-YSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIE 342
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 22 VIQAATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRI 81
V+ A A + VYY + T +F + + AM ++ GMRFKM FE EDS
Sbjct: 238 VLATARHATQTKTMFIVYY-KPRTSQFIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPER 296
Query: 82 SWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
+ GT+ V+ P W S WR L+V WDEP + VSPW +E
Sbjct: 297 R-YSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIE 342
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 35 FDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDS-SRISWFMGTISSVQV 93
F Y PR S +F + + AM+ + GMR++M FE E+S RI F GTI +
Sbjct: 173 FVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERI--FTGTI--IGS 226
Query: 94 AD-PIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
D +WP+S WR LQ+ WDEP +Q VSPW +E
Sbjct: 227 GDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWEIE 263
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 35 FDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDS-SRISWFMGTISSVQV 93
F Y PR S +F + + AM+ + GMR++M FE E+S RI F GTI +
Sbjct: 260 FVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERI--FTGTI--IGS 313
Query: 94 AD-PIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
D +WP+S WR LQ+ WDEP +Q VSPW +E
Sbjct: 314 GDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWEIE 350
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 35 FDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDS-SRISWFMGTISSVQV 93
F Y PR S +F + + AM+ + GMR++M FE E+S RI F GTI +
Sbjct: 281 FVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERI--FTGTI--IGS 334
Query: 94 AD-PIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
D +WP+S WR LQ+ WDEP +Q VSPW +E
Sbjct: 335 GDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWEIE 371
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 35 FDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDS-SRISWFMGTISSVQV 93
F Y PR S +F V + A++ + G RF+M FE E+S RI F GTI V
Sbjct: 264 FVVFYKPRIS--QFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERI--FTGTI--VGS 317
Query: 94 AD-PIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLSPFS 143
D +WP+S WR LQV WDEP +Q VSPW +E P + SP S
Sbjct: 318 GDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWEIE-----PFLATSPIS 363
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 22 VIQAATLAANGQ-PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSR 80
VI +A A + Q F VY P + +F V AM ++ G RF M FE +D S
Sbjct: 244 VIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSE 303
Query: 81 ISWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
+F GTI V P W S WR L+V WDE VSPW +E
Sbjct: 304 RRYF-GTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 350
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 22 VIQAATLAANGQ-PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSR 80
VI +A A + Q F VY PR+S +F V A+ ++ G RF M FE +D S
Sbjct: 246 VIASAKHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSE 303
Query: 81 ISWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHL 139
+F GTI V P W S WR L+V WDE VSPW +E + MPA+++
Sbjct: 304 RRYF-GTIIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIEHL--MPALNV 358
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 22 VIQAATLAANGQ-PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSR 80
VI +A A + Q F VY PR+S +F V A+ ++ G RF M FE +D S
Sbjct: 253 VIASAKHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDLSE 310
Query: 81 ISWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHL 139
+F GTI V P W S WR L+V WDE VSPW +E + MPA+++
Sbjct: 311 RRYF-GTIIGVSNFSP-HWKCSDWRSLEVQWDEFASFLRPNKVSPWEIEHL--MPALNV 365
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 22 VIQAATLAANGQ-PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSR 80
V+ +A A + Q F VY PR+S +F V A+ ++ G RF M E +D S
Sbjct: 248 VVASAKHAFDNQCMFTVVYKPRSS--KFIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSE 305
Query: 81 ISWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHL 139
F GTI V P W S WR L+V WDE K VSPW +E + MPAI++
Sbjct: 306 RRCF-GTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHL--MPAINV 360
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 22 VIQAATLAANGQ-PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSR 80
VI +A A + Q F VY PR+S +F V A+ ++ G RF M FE +D S
Sbjct: 248 VIASAKHAFDNQCIFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSE 305
Query: 81 ISWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHL 139
+F GTI V P W S WR L+V WDE VSPW +E + +PA+++
Sbjct: 306 RRYF-GTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHL--VPALNV 360
>AT1G34170.1 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 505
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 35 FDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQVA 94
F+ VY P +S +F + AM + G RF+M FE +D S + GTI V
Sbjct: 262 FNVVYKPSSS--QFVISYDKFVDAMNNNYIVGSRFRMQFEGKDFSE-KRYDGTIIGVNDM 318
Query: 95 DPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVE 129
P W S WR L+V WDE VSPW +E
Sbjct: 319 SP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIE 352
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 22 VIQAATLAANGQ-PFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSR 80
+I +A A + Q F VY PR+S +F V + ++ G RF M FE +D S
Sbjct: 248 IIASAKHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSE 305
Query: 81 ISWFMGTISSVQVADPIRWPSSPWRLLQVAWDEPDLLQNVKCVSPWLVELVSNMPAIHLS 140
F GTI V P W S WR L+V WDE VSPW +E HL+
Sbjct: 306 RRSF-GTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIE--------HLT 355
Query: 141 PFS 143
P+S
Sbjct: 356 PWS 358