Jatropha Genome Database

JcCB0466631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0466631.20 - phase: 1 /TE/partial
         (602 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20750.1 | Symbols:  | helicase-related | chr1:7203302-720899...   164   2e-40
AT1G20720.1 | Symbols:  | ATP binding / ATP-dependent DNA helica...    86   7e-17

>AT1G20750.1 | Symbols:  | helicase-related | chr1:7203302-7208998
            REVERSE
          Length = 1179

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 167/315 (53%), Gaps = 49/315 (15%)

Query: 63   SETSSQEDPEVTFVKETLSTGCNETTTTTASFSMDKSPNLNLSPPSAEFIDQVSFHSACL 122
            S T+  EDPE +FV   ++      T    S S  +S +L     S +  DQ        
Sbjct: 839  SVTNCDEDPETSFVSGMIN---GIATARPCSSSKYESSSLETGLRSLKSPDQFLKRHVSN 895

Query: 123  TNASRASDRAQCSGVATPRKDSTANNCSLIPEAESTLNLSVNSHTQKKRKSVGSPLI-DV 181
             N  R+   A+ S   TP + S  +  ++  EAES LN+SVNSH  K+RK   SP+I D+
Sbjct: 896  ANFRRSPLGAESS--VTPERYSIGDMRNMTLEAESPLNMSVNSHVLKRRKFTTSPIIIDL 953

Query: 182  KKQN-DSPNAQTSGCVGFIENTIAIKDASRRIEFDFATNSAQSLSIRLKKPQILPLDNSA 240
            +++N ++P+ +      F          +RRIEF F                        
Sbjct: 954  EEENSNAPDNRPEDHTSF----------TRRIEFGF------------------------ 979

Query: 241  PPSSDPVMDKK-LRISCSLCKSPLGRPENQLYVRCSLTSSSKVHLRSLVKERLERCTENT 299
                 P +D++ +RISCSLC+S L  PEN  Y  C LTSSSK +L SL+KE     +   
Sbjct: 980  -----PEVDQRVMRISCSLCRSTLSHPENNSYPICMLTSSSKTYLLSLLKETSGTGSAEM 1034

Query: 300  STCIPVLMTDITSVDQRLCNSNLEDKPGRGVWCEEDGCVFSSILCPFCSTFN-CLGVQIM 358
             T + V+MTD + V+QRLC +N E   G+G+WC++DGCVF +I CPFCS  N CLG+Q+M
Sbjct: 1035 PTSVSVIMTDCSLVNQRLC-TNSESSNGQGIWCQQDGCVFKTIFCPFCSVPNTCLGMQVM 1093

Query: 359  AADASNVQLLNKVCF 373
            A D+SNVQ ++K+ F
Sbjct: 1094 ATDSSNVQFMSKILF 1108


>AT1G20720.1 | Symbols:  | ATP binding / ATP-dependent DNA helicase/
            ATP-dependent helicase/ DNA binding / hydrolase, acting
            on acid anhydrides, in phosphorus-containing anhydrides /
            nucleic acid binding | chr1:7185658-7192794 REVERSE
          Length = 1175

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 48/62 (77%), Gaps = 2/62 (3%)

Query: 313  VDQRLCNSNLEDKPGRGVWCEEDGCVFSSILCPFCSTFN-CLGVQIMAADASNVQLLNKV 371
            V+QRLC    E   G+G+WCE+DGCVF++I CPFCS  N CLGVQ+MA D+SNVQ L+K+
Sbjct: 1039 VNQRLCR-KFEGLKGQGIWCEQDGCVFNTIYCPFCSIPNTCLGVQVMATDSSNVQFLSKI 1097

Query: 372  CF 373
             F
Sbjct: 1098 LF 1099



 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 63   SETSSQEDPEVTFVKET--LSTGCNETTTTTASFSMDKSP-NLNLSPPSAEFIDQVSFHS 119
            S T+  E PE +FV+ET  +  G +  +  + S +   SP  + L  P +   DQ+    
Sbjct: 905  SVTNCDEAPETSFVQETSGMINGISVASPCSCSMNESSSPATVGLRSPGSP--DQLLKQH 962

Query: 120  ACLTNASRASDRAQCSGVATPRKDSTANNCSLIPEAESTLNLSVNSHTQKKRKSVGSPLI 179
                N  ++    + S VAT  + S     SL  EAES+ N+SVNS   K+RK   SP+I
Sbjct: 963  ISTPNFRKSPLGTESSVVATSERYSFGGTRSLTLEAESSFNMSVNSQALKRRKFTSSPVI 1022

Query: 180  DVKKQN-DSP 188
            D++ +N D+P
Sbjct: 1023 DLEVENSDAP 1032