Jatropha Genome Database

JcCB0465031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0465031.10 - phase: 1 /pseudo/partial
         (251 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE...   321   3e-88
AT3G22740.1 | Symbols: HMT3 | HMT3; homocysteine S-methyltransfe...   320   7e-88
AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE...   318   3e-87
AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine S-me...   237   5e-63
AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine S-me...   208   2e-54

>AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE
           METHYLTRANSFERASE 2); homocysteine S-methyltransferase |
           chr3:23370575-23371974 REVERSE
          Length = 293

 Score =  321 bits (822), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/233 (66%), Positives = 183/233 (78%), Gaps = 2/233 (0%)

Query: 4   MXQVHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNC 63
           M QVHLDYL+AGA+II +ASYQATIQGFEAKG S          SVEIA EAR  YYD C
Sbjct: 14  MEQVHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKC 73

Query: 64  SKSSWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQI 123
             SS   M+   + +RPILVAAS+GSYGAYLADGSEYSG YGDS++L+ LKDFHRRRLQ+
Sbjct: 74  GTSS--SMDDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQV 131

Query: 124 LAKAGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASI 183
           LA++GAD+IAFETIPN              D+KIP WFSFNSKDG+NVVSGDSI EC SI
Sbjct: 132 LAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISI 191

Query: 184 ADSCKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWV 236
           A++C+++VAVGINCTPPRFI  L+L I KVT+KP+++YPNSGE+YDA+RK WV
Sbjct: 192 AENCEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWV 244


>AT3G22740.1 | Symbols: HMT3 | HMT3; homocysteine
           S-methyltransferase | chr3:8033200-8035710 REVERSE
          Length = 347

 Score =  320 bits (819), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 152/233 (65%), Positives = 180/233 (77%)

Query: 6   QVHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSK 65
           +VHLDYL++GANII+TASYQATIQGF AKGLS          SVEI  EAREI+Y+ C+K
Sbjct: 60  KVHLDYLESGANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTK 119

Query: 66  SSWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILA 125
            SWDF  +G  +RRPILVAAS+GSYGAYLADGSEYSG YGDSVS +TLKDFHRRR+QILA
Sbjct: 120 GSWDFAYAGKASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILA 179

Query: 126 KAGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIAD 185
           K+GAD+IAFETIPN              DI IPAWFSF SKDG++V  GDS+ ECA +AD
Sbjct: 180 KSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVAD 239

Query: 186 SCKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWVVS 238
           SCK +VA+GINCT PR+I  LI+S+ ++T KP+V+YPNSGE YD   K W+ S
Sbjct: 240 SCKNVVAIGINCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKS 292


>AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE
           METHYLTRANSFERASE 2); homocysteine S-methyltransferase |
           chr3:23370575-23372587 REVERSE
          Length = 333

 Score =  318 bits (814), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 153/230 (66%), Positives = 181/230 (78%), Gaps = 2/230 (0%)

Query: 7   VHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSKS 66
           VHLDYL+AGA+II +ASYQATIQGFEAKG S          SVEIA EAR  YYD C  S
Sbjct: 57  VHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTS 116

Query: 67  SWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILAK 126
           S   M+   + +RPILVAAS+GSYGAYLADGSEYSG YGDS++L+ LKDFHRRRLQ+LA+
Sbjct: 117 S--SMDDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAE 174

Query: 127 AGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIADS 186
           +GAD+IAFETIPN              D+KIP WFSFNSKDG+NVVSGDSI EC SIA++
Sbjct: 175 SGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAEN 234

Query: 187 CKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWV 236
           C+++VAVGINCTPPRFI  L+L I KVT+KP+++YPNSGE+YDA+RK WV
Sbjct: 235 CEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWV 284


>AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine
           S-methyltransferase | chr3:9480964-9482684 FORWARD
          Length = 326

 Score =  237 bits (604), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 120/236 (50%), Positives = 155/236 (65%), Gaps = 7/236 (2%)

Query: 6   QVHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSK 65
           +VH++YL+AGA+I++T+SYQATI GF ++GLS          SVE+A EAR+ +++  SK
Sbjct: 57  RVHMEYLEAGADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK 116

Query: 66  SSWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILA 125
            S      G+   R  LVAASIGSYGAYLADGSEYSG+YG++VSL  LKDFHRRRLQ+L 
Sbjct: 117 VS------GHSYNRA-LVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLV 169

Query: 126 KAGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIAD 185
           +AG D++AFETIPN               ++IPAW  F S DG    SG+S  EC    +
Sbjct: 170 EAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLN 229

Query: 186 SCKQLVAVGINCTPPRFIRELILSIAKVTNKPVVIYPNSGETYDAERKIWVVSYIF 241
               + AVGINC PP+FI  LI   AK+T K +V+YPNSGE +D + K W+ S  F
Sbjct: 230 KSNNIYAVGINCAPPQFIENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCF 285


>AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine
           S-methyltransferase | chr3:9480964-9482416 FORWARD
          Length = 268

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 138/211 (65%), Gaps = 7/211 (3%)

Query: 6   QVHLDYLDAGANIILTASYQATIQGFEAKGLSXXXXXXXXXXSVEIACEAREIYYDNCSK 65
           +VH++YL+AGA+I++T+SYQATI GF ++GLS          SVE+A EAR+ +++  SK
Sbjct: 57  RVHMEYLEAGADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK 116

Query: 66  SSWDFMESGNVTRRPILVAASIGSYGAYLADGSEYSGNYGDSVSLQTLKDFHRRRLQILA 125
            S      G+   R  LVAASIGSYGAYLADGSEYSG+YG++VSL  LKDFHRRRLQ+L 
Sbjct: 117 VS------GHSYNR-ALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLV 169

Query: 126 KAGADIIAFETIPNXXXXXXXXXXXXXXDIKIPAWFSFNSKDGINVVSGDSISECASIAD 185
           +AG D++AFETIPN               ++IPAW  F S DG    SG+S  EC    +
Sbjct: 170 EAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLN 229

Query: 186 SCKQLVAVGINCTPPRFIRELILSIAKVTNK 216
               + AVGINC PP+FI  LI   AK T++
Sbjct: 230 KSNNIYAVGINCAPPQFIENLIRKFAKATDE 260