Jatropha Genome Database

JcCB0464111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0464111.10 - phase: 0 /partial
         (61 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME...    82   6e-17
AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...    60   3e-10
AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...    60   3e-10

>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
           ISOMERASE); triose-phosphate isomerase |
           chr3:20553794-20556078 FORWARD
          Length = 254

 Score = 82.0 bits (201), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 41/49 (83%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKS 60
           T  +  GSVNGGNCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKKS
Sbjct: 205 TRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253


>AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 306

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVNGGN  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct: 255 TRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 303


>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 315

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVNGGN  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct: 264 TRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312