Jatropha Genome Database

JcCB0463411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0463411.10 - phase: 2 /pseudo/partial
         (86 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34160.1 | Symbols:  | nucleic acid binding | chr2:14426283-1...    86   5e-18
AT3G04620.1 | Symbols:  | nucleic acid binding | chr3:1255660-12...    85   8e-18
AT1G29250.1 | Symbols:  | nucleic acid binding | chr1:10223461-1...    84   2e-17

>AT2G34160.1 | Symbols:  | nucleic acid binding |
          chr2:14426283-14427220 FORWARD
          Length = 130

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKRYMQQ+N+VELSALGMAIATVVT+ EILK  G+ + +
Sbjct: 29 KKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEK 77


>AT3G04620.1 | Symbols:  | nucleic acid binding |
          chr3:1255660-1256739 REVERSE
          Length = 164

 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 44/54 (81%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRRVRLLS 84
          KKPLFFYVNLAKRY+QQHNEVELSALGMAI TVVTI+EILK  G    +  L S
Sbjct: 46 KKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTS 99


>AT1G29250.1 | Symbols:  | nucleic acid binding |
          chr1:10223461-10224592 REVERSE
          Length = 130

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKIMGWLLRR 79
          KKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVT+AEILK  G+ + +
Sbjct: 29 KKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEK 77