Jatropha Genome Database

JcCB0462781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0462781.10 - phase: 0 /partial
         (119 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74160.1 | Symbols:  | unknown protein | chr1:27887164-278911...    70   4e-13
AT1G18620.1 | Symbols:  | unknown protein | chr1:6410719-6414269...    69   8e-13
AT5G15580.1 | Symbols: LNG1 | LNG1 (LONGIFOLIA1) | chr5:5068495-...    68   1e-12
AT3G02170.1 | Symbols: LNG2 | LNG2 (LONGIFOLIA2) | chr3:396208-3...    58   1e-09

>AT1G74160.1 | Symbols:  | unknown protein |
          chr1:27887164-27891151 FORWARD
          Length = 1025

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAI 43
          M AK +H+L D++ DLQKQIGCMNGI Q+FDRHH L G R+++
Sbjct: 1  MAAKLLHSLADDSADLQKQIGCMNGIFQIFDRHHVLTGRRKSL 43


>AT1G18620.1 | Symbols:  | unknown protein | chr1:6410719-6414269
          FORWARD
          Length = 978

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAI 43
          M AK +H L DEN DLQK+IGCMNGI Q+FDRHH L   R+++
Sbjct: 1  MAAKLLHTLADENSDLQKKIGCMNGIFQIFDRHHILTSRRKSL 43


>AT5G15580.1 | Symbols: LNG1 | LNG1 (LONGIFOLIA1) |
          chr5:5068495-5071930 REVERSE
          Length = 927

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLPSSGQSGN 58
          M AK ++NL DENP+L KQIGCMNGI Q+F R H+    RR  G   KSLPS   S N
Sbjct: 1  MSAKLLYNLSDENPNLNKQIGCMNGIFQVFYRQHY--PPRRVTGDELKSLPSGKASDN 56


>AT3G02170.1 | Symbols: LNG2 | LNG2 (LONGIFOLIA2) |
          chr3:396208-399393 REVERSE
          Length = 905

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 34/58 (58%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLPSSGQSGN 58
          M AK ++NL DENP+L KQ GCMNGI Q+F R H         G   KSLP   + G+
Sbjct: 1  MSAKLLYNLSDENPNLNKQFGCMNGIFQVFYRQHCPATPVTVSGGAEKSLPPGERRGS 58