Jatropha Genome Database

JcCB0461591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461591.10 + phase: 2 /partial
         (110 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE REGUL...    74   2e-14

>AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE
           REGULATOR 7); transcription regulator/ two-component
           response regulator | chr5:638283-641461 REVERSE
          Length = 727

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 2   CGSSNMLGGPVEGNGG--NYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKT 59
           CGSSN+    +EGN    NY                      +NAGG NM SDNG AGK 
Sbjct: 585 CGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGGMNMGSDNG-AGKN 643

Query: 60  XXXXXXXXXXXXXNR--IDQNKFSQREAALTKFRQKRKERCFRKKV 103
                        +    D+NK SQREAALTKFRQKRKERCFRKKV
Sbjct: 644 GNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKV 689