Jatropha Genome Database

JcCB0461271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461271.10 + phase: 0 /partial
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52030.2 | Symbols:  | TraB protein-related | chr5:21128291-2...   127   1e-30

>AT5G52030.2 | Symbols:  | TraB protein-related |
           chr5:21128291-21130034 FORWARD
          Length = 402

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 1/122 (0%)

Query: 9   FPYFSKYRNIPNIKSVKPLKFSIKPPPPDFDFRSEILQQSRTTIAKSYPQLLDLADTGNL 68
           FP+F+ Y +    + +K +  S++ PPPDFDFR++I  +SR  IAK+YP+LLDLAD G L
Sbjct: 12  FPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNGTL 70

Query: 69  VVIEKQLFGPVPAWRTEFVEPDAIWLVGTTHICXXXXXXXXXXXXXXXXXXXXXELCKSR 128
           ++++KQ FGPVPAWR EFVEP+AIWLVGT+HI                      ELC+SR
Sbjct: 71  ILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCRSR 130

Query: 129 QI 130
           ++
Sbjct: 131 KV 132