Jatropha Genome Database

JcCB0460891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0460891.10 - phase: 0 
         (121 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33790.1 | Symbols: CER4, G7, FAR3 | CER4 (ECERIFERUM 4); fat...    57   2e-09
AT5G22500.1 | Symbols: FAR1 | FAR1 (FATTY ACID REDUCTASE 1); fat...    50   3e-07
AT3G44540.2 | Symbols: FAR4 | FAR4 (FATTY ACID REDUCTASE 4); bin...    50   4e-07
AT3G44540.1 | Symbols: FAR4 | FAR4 (FATTY ACID REDUCTASE 4); bin...    49   6e-07

>AT4G33790.1 | Symbols: CER4, G7, FAR3 | CER4 (ECERIFERUM 4); fatty
           acyl-CoA reductase (alcohol-forming)/ oxidoreductase,
           acting on the CH-CH group of donors |
           chr4:16204325-16207891 REVERSE
          Length = 493

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 22  MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSFPRYM 74
           +GSS+RNP++ S   +    YF+  PW  K+ K VKVG +++L +M SF RYM
Sbjct: 340 VGSSLRNPMKNSKFPELAYRYFSIKPWTNKEGKVVKVGAIEILSSMRSFHRYM 392


>AT5G22500.1 | Symbols: FAR1 | FAR1 (FATTY ACID REDUCTASE 1); fatty
           acyl-CoA reductase (alcohol-forming)/ oxidoreductase,
           acting on the CH-CH group of donors |
           chr5:7470541-7473916 FORWARD
          Length = 491

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 22  MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSFPRYMA 75
           +GSS +NPV +  L DF   YF + P IG++  P+ V K  +L  M  F  YM 
Sbjct: 335 VGSSCKNPVTFGQLHDFTARYFAKRPLIGRNGSPIIVVKGTILSTMAQFSLYMT 388


>AT3G44540.2 | Symbols: FAR4 | FAR4 (FATTY ACID REDUCTASE 4);
           binding / catalytic/ oxidoreductase, acting on the CH-CH
           group of donors | chr3:16124079-16127644 FORWARD
          Length = 433

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 22  MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSFPRYM 74
           +GSS +NP+ +  + D   SYFT+NP + +D   + V K  +L  M  F  YM
Sbjct: 337 VGSSCKNPITFEQIHDLAASYFTKNPLVRRDGSSILVSKGTILSTMAQFSFYM 389


>AT3G44540.1 | Symbols: FAR4 | FAR4 (FATTY ACID REDUCTASE 4);
           binding / catalytic/ oxidoreductase, acting on the CH-CH
           group of donors | chr3:16124079-16127769 FORWARD
          Length = 493

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 22  MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSFPRYMA 75
           +GSS +NP+ +  + D   SYFT+NP + +D   + V K  +L  M  F  YM 
Sbjct: 337 VGSSCKNPITFEQIHDLAASYFTKNPLVRRDGSSILVSKGTILSTMAQFSFYMT 390