Jatropha Genome Database

JcCB0458961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0458961.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55410.1 | Symbols:  | 2-oxoglutarate dehydrogenase E1 compon...   205   3e-53
AT5G65750.1 | Symbols:  | 2-oxoglutarate dehydrogenase E1 compon...   191   3e-49

>AT3G55410.1 | Symbols:  | 2-oxoglutarate dehydrogenase E1
           component, putative / oxoglutarate decarboxylase,
           putative / alpha-ketoglutaric dehydrogenase, putative |
           chr3:20541897-20545728 FORWARD
          Length = 1017

 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/111 (85%), Positives = 103/111 (92%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ +     +LLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDH+DLEEGI
Sbjct: 835 KPLIVMAPK---NLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSDLEEGI 891

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRLVLCSGKVYYELD+ERKK GA DVAICRVEQLCPFPYDLIQRELKRYP+
Sbjct: 892 RRLVLCSGKVYYELDDERKKVGATDVAICRVEQLCPFPYDLIQRELKRYPN 942



 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSN 29
           +HDQE GE+YCPLDH++MNQD EMFTVSN
Sbjct: 674 LHDQETGEEYCPLDHLIMNQDPEMFTVSN 702


>AT5G65750.1 | Symbols:  | 2-oxoglutarate dehydrogenase E1
           component, putative / oxoglutarate decarboxylase,
           putative / alpha-ketoglutaric dehydrogenase, putative |
           chr5:26304212-26307947 FORWARD
          Length = 1025

 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 100/111 (90%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ +     +LLRHK C SNLSEFDDV+GHPGFDKQGTRFKRLIKDQ+ H+DLEEGI
Sbjct: 839 KPLIVMAPK---NLLRHKQCVSNLSEFDDVKGHPGFDKQGTRFKRLIKDQSGHSDLEEGI 895

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRLVLCSGKVYYELDEERKK+  KDVAICRVEQLCPFPYDLIQRELKRYP+
Sbjct: 896 RRLVLCSGKVYYELDEERKKSETKDVAICRVEQLCPFPYDLIQRELKRYPN 946



 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 26/29 (89%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSN 29
           +HDQE GE+YCPLDH++ NQD EMFTVSN
Sbjct: 678 LHDQETGEEYCPLDHLIKNQDPEMFTVSN 706