Jatropha Genome Database

JcCB0456651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456651.10 - phase: 2 /partial
         (176 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41710.1 | Symbols:  | ovule development protein, putative | ...   118   2e-27
AT2G41710.2 | Symbols:  | ovule development protein, putative | ...   117   3e-27

>AT2G41710.1 | Symbols:  | ovule development protein, putative |
           chr2:17400274-17402903 REVERSE
          Length = 423

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 1   SRWDSSFSRMPGSEYFSSINYGAADDPASESDYVGSLCFERKIDLTSYIKWWGSNKTRQX 60
           SRWD+S SRMPG EYFS+I+YGA DD  +E D++GS C ERKIDLT YIKWWG+NK RQ 
Sbjct: 178 SRWDASASRMPGPEYFSNIHYGAGDDRGTEGDFLGSFCLERKIDLTGYIKWWGANKNRQP 237

Query: 61  XXXXXXXXXXXHGYAEDVGGELKTSEWAVQPTEPYQMPCLGM 102
                          ED G ELKT E     TEPY+ P LG+
Sbjct: 238 ESSSKASEDAN---VEDAGTELKTLEHTSHATEPYKAPNLGV 276


>AT2G41710.2 | Symbols:  | ovule development protein, putative |
           chr2:17400274-17402903 REVERSE
          Length = 428

 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 1   SRWDSSFSRMPGSEYFSSINYGAADDPASESDYVGSLCFERKIDLTSYIKWWGSNKTRQX 60
           SRWD+S SRMPG EYFS+I+YGA DD  +E D++GS C ERKIDLT YIKWWG+NK RQ 
Sbjct: 183 SRWDASASRMPGPEYFSNIHYGAGDDRGTEGDFLGSFCLERKIDLTGYIKWWGANKNRQP 242

Query: 61  XXXXXXXXXXXHGYAEDVGGELKTSEWAVQPTEPYQMPCLGM 102
                          ED G ELKT E     TEPY+ P LG+
Sbjct: 243 ESSSKASEDAN---VEDAGTELKTLEHTSHATEPYKAPNLGV 281