Jatropha Genome Database

JcCB0456251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456251.10 - phase: 2 /pseudo/partial
         (185 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01800.1 | Symbols:  | preprotein translocase secA subunit, p...    96   9e-21

>AT4G01800.1 | Symbols:  | preprotein translocase secA subunit,
           putative | chr4:770926-776131 REVERSE
          Length = 1022

 Score = 96.3 bits (238), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/138 (43%), Positives = 78/138 (56%), Gaps = 9/138 (6%)

Query: 20  MAAPLCDXXXXXXXXXXXXFPPNSLVANEIYHGKTRLVTS--FFGAK---SPKMLGSAAK 74
           M +PLCD                 ++A+ I   + RL++S  F+G K   + K+  S   
Sbjct: 1   MVSPLCDSQLLYHRPSISPTASQFVIADGIILRQNRLLSSSSFWGTKFGNTVKLGVSGCS 60

Query: 75  TWKLEXXXXXXMVAMASLGGLLGGIFKGTDTGESTRQQYAPTVRLINGLETEMSALSDSE 134
           +   +          ASLGGLL GIFKG+D GESTRQQYA  V  +N LETE+SALSDSE
Sbjct: 61  SCSRKRSTSVN----ASLGGLLSGIFKGSDNGESTRQQYASIVASVNRLETEISALSDSE 116

Query: 135 LRNKTSVLKERALNGESL 152
           LR +T  LK+RA  GES+
Sbjct: 117 LRERTDALKQRAQKGESM 134