Jatropha Genome Database

JcCB0456051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0456051.10 - phase: 1 /pseudo/partial
         (223 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34710.2 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECAR...   264   4e-71
AT4G34710.1 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECAR...   264   4e-71
AT2G16500.1 | Symbols: ADC1, ARGDC1, ARGDC, SPE1 | ADC1 (ARGININ...   258   1e-69

>AT4G34710.2 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE
           DECARBOXYLASE 2); arginine decarboxylase |
           chr4:16560315-16562450 REVERSE
          Length = 711

 Score =  264 bits (674), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 144/164 (87%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPE+LLAMSCLCKG+PD+FLVCNGFKDAEYISLALL RKLALNT          
Sbjct: 168 GLEAGSKPEILLAMSCLCKGSPDAFLVCNGFKDAEYISLALLGRKLALNTVIVLEQEEEL 227

Query: 93  XXXXXMSKKLSIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEGAGML 152
                +S+K+++RPVIG+RAKLRTKHSGHFGSTSGEKGKFGLTTTQI+RVV+KL  +GML
Sbjct: 228 DLVIELSQKMNVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQIVRVVRKLRQSGML 287

Query: 153 DCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMQVL 196
           DCLQLLHFHIGSQIPST+LL+DGV EAAQ+YCELVRLGA M+V+
Sbjct: 288 DCLQLLHFHIGSQIPSTSLLSDGVAEAAQLYCELVRLGAHMKVI 331


>AT4G34710.1 | Symbols: ADC2, SPE2, ATADC2 | ADC2 (ARGININE
           DECARBOXYLASE 2); arginine decarboxylase |
           chr4:16560315-16562450 REVERSE
          Length = 711

 Score =  264 bits (674), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 144/164 (87%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPE+LLAMSCLCKG+PD+FLVCNGFKDAEYISLALL RKLALNT          
Sbjct: 168 GLEAGSKPEILLAMSCLCKGSPDAFLVCNGFKDAEYISLALLGRKLALNTVIVLEQEEEL 227

Query: 93  XXXXXMSKKLSIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEGAGML 152
                +S+K+++RPVIG+RAKLRTKHSGHFGSTSGEKGKFGLTTTQI+RVV+KL  +GML
Sbjct: 228 DLVIELSQKMNVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQIVRVVRKLRQSGML 287

Query: 153 DCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMQVL 196
           DCLQLLHFHIGSQIPST+LL+DGV EAAQ+YCELVRLGA M+V+
Sbjct: 288 DCLQLLHFHIGSQIPSTSLLSDGVAEAAQLYCELVRLGAHMKVI 331


>AT2G16500.1 | Symbols: ADC1, ARGDC1, ARGDC, SPE1 | ADC1 (ARGININE
           DECARBOXYLASE 1); arginine decarboxylase |
           chr2:7150796-7152904 REVERSE
          Length = 702

 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/164 (76%), Positives = 140/164 (85%)

Query: 33  GLEAGSKPELLLAMSCLCKGNPDSFLVCNGFKDAEYISLALLARKLALNTXXXXXXXXXX 92
           GLEAGSKPE+LLAMSCLCKGNP++FLVCNGFKD+EYISLAL  RKL LNT          
Sbjct: 157 GLEAGSKPEILLAMSCLCKGNPEAFLVCNGFKDSEYISLALFGRKLELNTVIVLEQEEEL 216

Query: 93  XXXXXMSKKLSIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEGAGML 152
                +S+K+++RPVIG+RAKLRTKHSGHFGSTSGEKGKFGLTT QILRVV+KL   GML
Sbjct: 217 DLVIDLSQKMNVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTVQILRVVRKLSQVGML 276

Query: 153 DCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGAQMQVL 196
           DCLQLLHFHIGSQIPSTALL+DGV EAAQ+YCELVRLGA M+V+
Sbjct: 277 DCLQLLHFHIGSQIPSTALLSDGVAEAAQLYCELVRLGAHMKVI 320