Jatropha Genome Database

JcCB0455001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0455001.10 - phase: 1 /pseudo/partial
         (287 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01690.1 | Symbols: PPOX, HEMG1, PPO1 | PPOX; protoporphyrino...   169   2e-42
AT4G01690.2 | Symbols: PPOX | PPOX; protoporphyrinogen oxidase |...   102   3e-22

>AT4G01690.1 | Symbols: PPOX, HEMG1, PPO1 | PPOX; protoporphyrinogen
           oxidase | chr4:729929-732309 FORWARD
          Length = 537

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 87/100 (87%)

Query: 188 QTQSELVEAVDRELRKMLIKPNAKDPFVLGVRVWPQAIPQFLIGHFDILDAAKGALRDKG 247
           +++ ELVEAVDR+LRKMLIKPN+ DP  LGVRVWPQAIPQFL+GHFDILD AK +L   G
Sbjct: 438 KSEGELVEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVGHFDILDTAKSSLTSSG 497

Query: 248 LEGLFLGGNYVSGVALGRCVEGAYEVAAEVTNFLSQYAYK 287
            EGLFLGGNYV+GVALGRCVEGAYE A EV NF+S+YAYK
Sbjct: 498 YEGLFLGGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK 537


>AT4G01690.2 | Symbols: PPOX | PPOX; protoporphyrinogen oxidase |
           chr4:729929-732309 FORWARD
          Length = 506

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 53/65 (81%)

Query: 223 QAIPQFLIGHFDILDAAKGALRDKGLEGLFLGGNYVSGVALGRCVEGAYEVAAEVTNFLS 282
           + +  FL+GHFDILD AK +L   G EGLFLGGNYV+GVALGRCVEGAYE A EV NF+S
Sbjct: 442 ELVEAFLVGHFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEVNNFMS 501

Query: 283 QYAYK 287
           +YAYK
Sbjct: 502 RYAYK 506