Jatropha Genome Database

JcCB0454891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0454891.10 + phase: 0 /pseudo
         (261 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66130.1 | Symbols: ATRAD17, RAD17 | ATRAD17 (ARABIDOPSIS THA...   249   1e-66

>AT5G66130.1 | Symbols: ATRAD17, RAD17 | ATRAD17 (ARABIDOPSIS
           THALIANA RADIATION SENSITIVE) | chr5:26434236-26437091
           FORWARD
          Length = 599

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/244 (54%), Positives = 161/244 (65%), Gaps = 3/244 (1%)

Query: 14  GTQYMSKLDEFVNFIEKVRKYGSIPPSYSAESKXXXXXXXXXXXVTNGRVAFERLQNCLL 73
           G +Y SKLDEF NF+E  RKYG +  S +   K           + NGR AFERLQNCLL
Sbjct: 181 GLKYTSKLDEFENFVESTRKYGVMASSSTDGIKAPVVLLIDDLPLANGRHAFERLQNCLL 240

Query: 74  LLVRTTRIPTVILVTDYDKADLADNTSRYMEELQSSLESAGACKVAFNPITNNSIKKALT 133
           LLV++T+IPTVIL+TD++ AD +D T+R ME+ QSSLE AGA KVAFNPIT NSIKK L 
Sbjct: 241 LLVKSTQIPTVILITDHNNADSSDQTARRMEDTQSSLERAGALKVAFNPITKNSIKKVLQ 300

Query: 134 KICKHEQFNVTAEQIDLIAKASGGDIRNAITSLQLFCVKPNMGXXXXXXXX---TPSYSD 190
           +IC+ E   VT  +ID +A ASGGDIR+AITSLQLF VKP +              +Y  
Sbjct: 301 RICREEHCKVTTMEIDQMATASGGDIRHAITSLQLFSVKPELNHTKIKSPRPGMEDNYHG 360

Query: 191 GKPDDINSLICGFSLLFGRDETLSLFHALGKFLHNKRETEVTMGSDVCYFFYGTKFSRLP 250
            +    + L  G S  FGRDETLSLFHALGKFLHNKRET+  + S+        +F+RLP
Sbjct: 361 NEQTMYSGLDSGISSCFGRDETLSLFHALGKFLHNKRETDNVIISECSSSLVHDEFARLP 420

Query: 251 LEMD 254
           L+MD
Sbjct: 421 LKMD 424