Jatropha Genome Database

JcCB0453321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453321.10 - phase: 0 /partial
         (151 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROT...   224   1e-59

>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN
           HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding
           / mismatched DNA binding / nuclease |
           chr3:8823229-8829571 REVERSE
          Length = 1118

 Score =  224 bits (572), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/145 (72%), Positives = 124/145 (85%), Gaps = 6/145 (4%)

Query: 6   MQVTEDFIPIISRIKASMAPLGGPKGEVSYAREHESVWFKGKRFAPAVWAGTPGEEQIKQ 65
           + V EDF PIISRIKA+ A LGGPKGE++YAREHESVWFKGKRF P++WAGT GE+QIKQ
Sbjct: 571 LAVAEDFHPIISRIKATTASLGGPKGEIAYAREHESVWFKGKRFTPSIWAGTAGEDQIKQ 630

Query: 66  LKPAVDSKGRKVGEEWFTTIKVEDALMRYHAAIDKAKARVLELLRGLSAELQSRINILIF 125
           LKPA+DSKG+KVGEEWFTT KVE AL+RYH A + AKARVLELLR LS +LQ++IN+L+F
Sbjct: 631 LKPALDSKGKKVGEEWFTTPKVEIALVRYHEASENAKARVLELLRELSVKLQTKINVLVF 690

Query: 126 ASMLLVIAKALFAHV------RWVF 144
           ASMLLVI+KALF+H       +WVF
Sbjct: 691 ASMLLVISKALFSHACEGRRRKWVF 715