Jatropha Genome Database

JcCB0453091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453091.20 - phase: 0 /partial
         (61 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56330.1 | Symbols:  | N2,N2-dimethylguanosine tRNA methyltra...    82   1e-16

>AT3G56330.1 | Symbols:  | N2,N2-dimethylguanosine tRNA
           methyltransferase family protein |
           chr3:20890250-20891933 FORWARD
          Length = 433

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/51 (74%), Positives = 43/51 (84%)

Query: 1   MASRGKINSPSLKTMMSTLVKKGYAATRSHIASNAIKTDCPMSMCIRIAKE 51
           MASR K+NSP LK MMS LVK+GYAA+RSHI  NA+KTDCPMS  +RIAKE
Sbjct: 379 MASRAKMNSPPLKKMMSALVKEGYAASRSHIIPNALKTDCPMSHFVRIAKE 429