Jatropha Genome Database

JcCB0453091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453091.10 + phase: 0 
         (60 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUP...   105   7e-24
AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTA...   105   7e-24
AT3G56350.1 | Symbols:  | superoxide dismutase (Mn), putative / ...    91   2e-19
AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...    49   7e-07
AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...    49   7e-07
AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...    49   7e-07
AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...    48   2e-06

>AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE
           SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide
           dismutase | chr3:3418015-3419581 FORWARD
          Length = 231

 Score =  105 bits (261), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 51/55 (92%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANE 56
            DPLVTKG +LVPL+GIDVWEHAYYLQYKNVRP+YLKN+WKVINWKYASEVY  E
Sbjct: 175 QDPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKE 229


>AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE
           1); metal ion binding / superoxide dismutase |
           chr3:3418015-3419581 FORWARD
          Length = 230

 Score =  105 bits (261), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 51/55 (92%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANE 56
            DPLVTKG +LVPL+GIDVWEHAYYLQYKNVRP+YLKN+WKVINWKYASEVY  E
Sbjct: 174 QDPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKE 228


>AT3G56350.1 | Symbols:  | superoxide dismutase (Mn), putative /
           manganese superoxide dismutase, putative |
           chr3:20894155-20895625 REVERSE
          Length = 241

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 45/52 (86%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVY 53
            DPLVTKG  LVPL+GIDVWEHAYY QYKN R +YLKNIW VINWKYA++V+
Sbjct: 180 QDPLVTKGSHLVPLIGIDVWEHAYYPQYKNARAEYLKNIWTVINWKYAADVF 231


>AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12886501 REVERSE
          Length = 212

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 4/50 (8%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKN-IWKVINWKYAS 50
           ++PLV       PLL IDVWEHAYYL ++N RPDY+K  +  +++W+  S
Sbjct: 155 VNPLVLGS---FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 201


>AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12886501 REVERSE
          Length = 212

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 4/50 (8%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKN-IWKVINWKYAS 50
           ++PLV       PLL IDVWEHAYYL ++N RPDY+K  +  +++W+  S
Sbjct: 155 VNPLVLGS---FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 201


>AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12886501 REVERSE
          Length = 212

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 4/50 (8%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKN-IWKVINWKYAS 50
           ++PLV       PLL IDVWEHAYYL ++N RPDY+K  +  +++W+  S
Sbjct: 155 VNPLVLGS---FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 201


>AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12885660 REVERSE
          Length = 186

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 14  PLLGIDVWEHAYYLQYKNVRPDYLKN-IWKVINWKYAS 50
           PLL IDVWEHAYYL ++N RPDY+K  +  +++W+  S
Sbjct: 138 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 175