Jatropha Genome Database

JcCB0450851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0450851.10 + phase: 1 /pseudo/partial
         (155 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROT...   170   4e-43

>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN
           HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding
           / mismatched DNA binding / nuclease |
           chr3:8823229-8829571 REVERSE
          Length = 1118

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 98/122 (80%), Gaps = 1/122 (0%)

Query: 21  REANHIEFCRIKNVLDEILHMHRNLELTEILKSLMDPTWVATGLKIDFETLVNECEWASD 80
           REAN+IEFCRIKNVLD++LHMHR+ EL EILK LMDPTWVATGLKIDF+T VNEC WASD
Sbjct: 452 REANYIEFCRIKNVLDDVLHMHRHAELVEILKLLMDPTWVATGLKIDFDTFVNECHWASD 511

Query: 81  RICEMIYLEDKIDRKSDSH-SVVPSEFFEDMELSWRGRVKRIHIEEEFAEVESAAQALSS 139
            I EMI L++    ++ S    VP+EFF DME SWRGRVK IHIEEE  +VE +A+ALS 
Sbjct: 512 TIGEMISLDENESHQNVSKCDNVPNEFFYDMESSWRGRVKGIHIEEEITQVEKSAEALSL 571

Query: 140 AV 141
           AV
Sbjct: 572 AV 573