Jatropha Genome Database
- JcCB0450571.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0450571.10 - phase: 2 /partial
(381 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21200.1 | Symbols: | transcription factor | chr1:7421483-74... 218 4e-57
AT1G76870.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 194 6e-50
AT3G10040.1 | Symbols: | transcription factor | chr3:3096580-30... 157 1e-38
>AT1G21200.1 | Symbols: | transcription factor |
chr1:7421483-7422814 FORWARD
Length = 443
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 136/175 (77%), Gaps = 4/175 (2%)
Query: 18 SEDDEPSFMEDG-NGESSSAAKGKNGSTWQRMKWTDNIVRLLIAIVACVGDDGPFEGVEG 76
S+DDEPSF E+G +G + A + GS WQR+KWTD +V+LLI V+ +GDD
Sbjct: 86 SDDDEPSFTEEGGDGVHNEANRSTKGSPWQRVKWTDKMVKLLITAVSYIGDD--SSIDSS 143
Query: 77 LKRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTSCRVV 136
+RK +LQKKGKWK+VSK+M +G HVSPQQCEDKFNDLNKRYK+LN++LGRGTSC+VV
Sbjct: 144 SRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVV 203
Query: 137 ENPALMDSMP-LSDKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNCQDLDLQGCL 190
ENPAL+DS+ L+DK KDDVRKI+SSKHLFY+EMC+YHNG R+ DL LQ L
Sbjct: 204 ENPALLDSIGYLNDKEKDDVRKIMSSKHLFYEEMCSYHNGNRLHLPHDLALQRSL 258
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 280 KKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFETSXXXXXXXXXXXXQ 339
+K+W++ + LQL EQ++ IQ + ELEKQRF+W R+ K+D+E E +
Sbjct: 370 QKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFSKKRDQELERMRMENERMKLENDR 429
Query: 340 SILQLRQKQLGMDF 353
L+L+Q++LG++
Sbjct: 430 MGLELKQRELGVEL 443
>AT1G76870.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 16 plant
structures; EXPRESSED DURING: 11 growth stages; BEST
Arabidopsis thaliana protein match is: transcription
factor (TAIR:AT1G21200.1); Has 324 Blast hits to 269
proteins in 64 species: Archae - 0; Bacteria - 2;
Metazoa - 125; Fungi - 12; Plants - 63; Viruses - 0;
Other Eukaryotes - 122 (source: NCBI BLink). |
chr1:28857250-28858407 FORWARD
Length = 385
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 179/342 (52%), Gaps = 29/342 (8%)
Query: 18 SEDDEPSFMEDGNGESSSAAKGKNGSTWQRMKWTDNIVRLLIAIVACVGDDGPFEGVEGL 77
SEDDE + S K K S WQR+KW D +V+L+I ++ +G+D G
Sbjct: 61 SEDDELCLLS-----SDGQNKSKENSPWQRVKWMDKMVKLMITALSYIGEDS------GS 109
Query: 78 KRKSGILQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTSCRVVE 137
+K +LQKKGKW++VSK+M +G HVSPQQCEDKFNDLNKRYK+LNE+LGRGTSC VVE
Sbjct: 110 DKKFAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVE 169
Query: 138 NPALMDSMP-LSDKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNCQDLDLQGCLSPLERC 196
NP+L+D + L++K KD+VR+I+SSKHLFY+EMC+YHNG R+ D +Q L +
Sbjct: 170 NPSLLDKIDYLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSLHLITLG 229
Query: 197 SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVRMDKYSERNKVNEED------- 249
S+ + R+ + V +
Sbjct: 230 SRDDHDNDEHGKHQNEDLDDDDDYEEDHDGALSDRPLKRLRQSQSHEDVGHPNKGYDVPC 289
Query: 250 -ARLWSQSGGLIGFEVEMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVSIQSQAFELEKQ 308
R + I + AA Q ++ I+ + L+L +++ IQ++ ELE+Q
Sbjct: 290 LPRSQADVNRGISLDSRKAAGLQ---------RQQIESKSLELEGRKLQIQAEMMELERQ 340
Query: 309 RFKWLRYCSKKDREFETSXXXXXXXXXXXXQSILQLRQKQLG 350
+FKW + +++++ + L+L++ +LG
Sbjct: 341 QFKWEVFSKRREQKLAKMRMENERMKLENERMSLELKRIELG 382
>AT3G10040.1 | Symbols: | transcription factor |
chr3:3096580-3097875 REVERSE
Length = 431
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 115/184 (62%), Gaps = 20/184 (10%)
Query: 6 VSPFSATNNGNGSEDDEPSFMEDGNGESSSAAKGKNG----STWQRMKWTDNIVRLLIAI 61
+SP S G DDE G+G + + G +G S W RMKWTD +VRLLI
Sbjct: 63 MSPISG-----GGCDDEDRGSGSGSGCNPEDSAGTDGKRKLSQWHRMKWTDTMVRLLIMA 117
Query: 62 VACVGDDG----PFEGVEGLKRKSGILQKKGK------WKTVSKMMISKGCHVSPQQCED 111
V +GD+ P + + G G WK+VS+ M+ KG VSPQQCED
Sbjct: 118 VFYIGDEAGLNDPVDAKKKTGGGGGGGGGGGMLQKKGKWKSVSRAMVEKGFSVSPQQCED 177
Query: 112 KFNDLNKRYKRLNEILGRGTSCRVVENPALMDSM-PLSDKAKDDVRKILSSKHLFYKEMC 170
KFNDLNKRYKR+N+ILG+G +CRVVEN L++SM L+ K KD+V+K+L+SKHLF++EMC
Sbjct: 178 KFNDLNKRYKRVNDILGKGIACRVVENQGLLESMDHLTPKLKDEVKKLLNSKHLFFREMC 237
Query: 171 AYHN 174
AYHN
Sbjct: 238 AYHN 241
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 265 EMAAIFQDPAVSLWEKKEWIKKQKLQLLEQRVSIQSQAFELEKQRFKWLRYCSKKDREFE 324
E A++ +D S+WEKKEWI+++ L++ E+++ + + E+EKQR KW+RY SKK+RE E
Sbjct: 328 EAASVVEDVGKSVWEKKEWIRRKMLEIEEKKIGYEWEGVEMEKQRVKWMRYRSKKEREME 387
Query: 325 TSXXXXXXXXXXXXQSILQLRQKQLGMD-FRSSETSREPTS 364
+ + IL LR+ ++ ++ +SS T +P+S
Sbjct: 388 KAKLDNQRRRLETERMILMLRRSEIELNELQSSGTRVDPSS 428