Jatropha Genome Database

JcCB0449291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449291.10 - phase: 2 /TE/pseudo/partial
         (477 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymer...    54   3e-07

>AT4G20520.1 | Symbols:  | RNA binding / RNA-directed DNA polymerase
           | chr4:11045912-11047716 FORWARD
          Length = 376

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 331 NRMKSCLSNVISDCQSAFVPGRAIMDTVMIAYEIMYHLKRKTQGRVREVALKTDMSKAYD 390
            R+K  ++N+I   Q++F+PGR   D ++   E ++ ++RK +G    + LK D+ KAYD
Sbjct: 3   ERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRK-KGVKGWMLLKLDLEKAYD 61

Query: 391 HVEXLFLQNMLFKLGFCMDW 410
            +   +L++ L   GF   W
Sbjct: 62  RIRWDYLEDTLISAGFPEVW 81