Jatropha Genome Database

JcCB0449231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449231.10 + phase: 1 /partial
         (156 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43360.1 | Symbols: BIO2, BIOB | BIO2 (BIOTIN AUXOTROPH 2); b...   222   9e-59

>AT2G43360.1 | Symbols: BIO2, BIOB | BIO2 (BIOTIN AUXOTROPH 2);
           biotin synthase | chr2:18010918-18013129 REVERSE
          Length = 378

 Score =  222 bits (565), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 115/128 (89%), Gaps = 3/128 (2%)

Query: 28  MSVQPTHPESVPINALVSVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 87
           ++  P+HPESVPINAL++VKGTPL+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRF
Sbjct: 252 LATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRF 311

Query: 88  SMPEQALCFLAGANSIFTGEKLLTTPNNDFDVDQQMFKVLGLIPKAPSFSEDEEIAFESE 147
           SM EQALCFLAGANSIFTGEKLLTTPNNDFD DQ MFK LGLIPK PSFSED+    ESE
Sbjct: 312 SMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDDS---ESE 368

Query: 148 NCQAVSSS 155
           NC+ V+S+
Sbjct: 369 NCEKVASA 376