Jatropha Genome Database
- JcCB0449001.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0449001.10 + phase: 0 /TE/partial
(261 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586)... 237 6e-63
AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 82 3e-16
AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 80 2e-15
AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17... 75 4e-14
AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative | chr5... 75 5e-14
AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16... 74 9e-14
AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10... 74 1e-13
AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE SU... 73 2e-13
AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 72 3e-13
AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) | chr5:27... 72 5e-13
AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 71 8e-13
AT5G11200.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 69 3e-12
AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 69 3e-12
AT5G11200.3 | Symbols: | DEAD/DEAH box helicase, putative | chr... 69 3e-12
AT5G11170.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 69 4e-12
AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 69 4e-12
AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 68 6e-12
AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 67 8e-12
AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 67 8e-12
AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 67 8e-12
AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 67 8e-12
AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 67 9e-12
AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 67 9e-12
AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 67 1e-11
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 2e-11
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 2e-11
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 2e-11
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 67 2e-11
AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 66 2e-11
AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 65 4e-11
AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 65 4e-11
AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative | chr1... 65 4e-11
AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 64 7e-11
AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18... 64 8e-11
AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 64 9e-11
AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20)... 64 1e-10
AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein ... 63 2e-10
AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein ... 63 2e-10
AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28... 62 4e-10
AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 62 5e-10
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 60 1e-09
AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/ DE... 60 2e-09
AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 60 2e-09
AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 59 2e-09
AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR... 59 3e-09
AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 59 3e-09
AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 59 3e-09
AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA helic... 59 4e-09
AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA helic... 59 4e-09
AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 58 5e-09
AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11)... 58 5e-09
AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11)... 58 5e-09
AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11)... 58 5e-09
AT5G11170.2 | Symbols: | ATP binding / ATP-dependent helicase/ ... 58 7e-09
AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 58 7e-09
AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase... 57 9e-09
AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 57 1e-08
AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 57 1e-08
AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 57 1e-08
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 56 2e-08
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 56 3e-08
AT1G72730.1 | Symbols: | eukaryotic translation initiation fact... 56 3e-08
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 56 3e-08
AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein ... 55 6e-08
AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 54 1e-07
AT3G19760.1 | Symbols: | eukaryotic translation initiation fact... 52 3e-07
AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22... 52 3e-07
AT1G28180.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 51 6e-07
AT1G51380.1 | Symbols: | eukaryotic translation initiation fact... 51 6e-07
AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIA... 51 7e-07
AT3G53110.1 | Symbols: LOS4 | LOS4 (LOW EXPRESSION OF OSMOTICALL... 49 2e-06
AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA h... 48 6e-06
>AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586);
ATP binding / ATP-dependent helicase/ helicase/ nucleic
acid binding | chr1:4351888-4353543 FORWARD
Length = 551
Score = 237 bits (604), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 138/264 (52%), Positives = 168/264 (63%), Gaps = 6/264 (2%)
Query: 1 MPALVSSRLL-LFGESLPFQKLSLVSRTAWCLRRIQHSTQVGQDRGPLTIASVGLKGEFE 59
M A S+R L L + F+K+S R+ + V ++ G LT+AS+ L
Sbjct: 1 MAASTSTRFLVLLKDFSAFRKISWTCAATNFHRQSRFLCHVAKEDGSLTLASLDLGN--- 57
Query: 60 RTNKIKTDKREKVKLDSAIEVPKSKVKPIGNHAFRAVPES--LEIESTPFSAKSFXXXXX 117
+ K K K++ E+ + KV+ + N + V E EI S FSAKSF
Sbjct: 58 KPRKFGKGKAMKLEGSFVTEMGQGKVRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGL 117
Query: 118 XXXXXXXXXXXXFKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTN 177
F VPTDVQSAA+P I+K HD VIQSYTGSGKTLAY+LPILSE+GPL
Sbjct: 118 PDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAE 177
Query: 178 KSSNGDKEDRKKPEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEE 237
KS + E+ K+ EI+A+IVAPSRELGMQIVREVEKLLGP +++ VQQLVGGANR RQEE
Sbjct: 178 KSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEE 237
Query: 238 ALKKNKPAIVVGTPGRIAEISASG 261
ALKKNKPAIVVGTPGRIAEIS G
Sbjct: 238 ALKKNKPAIVVGTPGRIAEISKGG 261
>AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:6461444-6463687 FORWARD
Length = 472
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PTD+Q A+PT+ D ++ + TGSGKTL Y+L I S + P ++
Sbjct: 96 FVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINP-------------QR 142
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANK-----KAVQQLVGGANRSRQEEALKKNKP 244
++AVIV P+RELGMQ+ + V ++L ++ V L+ G R + LK P
Sbjct: 143 SSVQAVIVVPTRELGMQVTK-VARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPP 201
Query: 245 AIVVGTPGRIAEI 257
AI+V T + +
Sbjct: 202 AILVATVASLCHM 214
>AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:6136333-6139510 FORWARD
Length = 621
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
+VPT++Q IP +++ VV+ S+TGSGKTLAY+LPI+ + ++++ G K ++
Sbjct: 132 IEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLM--REDEANLGKKTKPRR 189
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P V++ P+REL Q+ R + + A +++ LV G +R R +E N +VVG
Sbjct: 190 P--RTVVLCPTRELSEQVYRVAKSISHHARFRSI--LVSGGSRIRPQEDSLNNAIDMVVG 245
Query: 250 TPGRIAE 256
TPGRI +
Sbjct: 246 TPGRILQ 252
>AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17) |
chr2:16976783-16979392 FORWARD
Length = 609
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ PT VQ+ AIP IL DV++ + TG+GKT+AY+ P++ + + K DR
Sbjct: 50 FEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL------QGHSPKVDRSH 103
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
A+++ P+REL +Q+ +EKLL + ++GG +++++ L+K +I++
Sbjct: 104 GTF-ALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKG-ISILIA 161
Query: 250 TPGRIAE 256
TPGR+ +
Sbjct: 162 TPGRLLD 168
>AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative |
chr5:25472598-25475196 REVERSE
Length = 522
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
++ T VQ A +P ILK DV+ ++ TG+GKT+A++LP + V S D K+
Sbjct: 74 YETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVV-----VKSPPTSPDNKR 128
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P I A+++ P+REL Q E LL VQ ++GG +++ ++ N I+V
Sbjct: 129 PPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVA 188
Query: 250 TPGRIAE 256
TPGR+ +
Sbjct: 189 TPGRLKD 195
>AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16) |
chr4:16631661-16634834 FORWARD
Length = 626
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEI 192
PT +Q +AIP IL+ DVV ++ TGSGKTLAY+LP+L K + D +KK
Sbjct: 69 PTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL-------QKLFSADSVSKKKLAP 121
Query: 193 EAVIVAPSRELGMQIVREVEKL--LGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGT 250
A I+ PSREL Q+ EV L L KAV QL + S AL P I+V T
Sbjct: 122 SAFILVPSRELCQQVYTEVSSLIELCRVQLKAV-QLTSSMSASDMRNAL-AGLPEILVST 179
Query: 251 PGRIAEISASG 261
P I + A+G
Sbjct: 180 PACIPKCFAAG 190
>AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10) |
chr5:24546601-24549148 REVERSE
Length = 456
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
+K P+ +Q+ A+P L+ DV+ + TGSGKT A+ +PIL + S K R
Sbjct: 29 WKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVY-DSEPKKGRRPD 87
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P A +++P+REL +QI + E LG LVGG +R +Q AL K +P ++V
Sbjct: 88 PAFFACVLSPTRELAIQIAEQFEA-LGADISLRCAVLVGGIDRMQQTIALGK-RPHVIVA 145
Query: 250 TPGRIAE 256
TPGR+ +
Sbjct: 146 TPGRLWD 152
>AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE
SUPPRESSOR 2); ATP-dependent helicase/ RNA binding |
chr5:2794540-2797548 FORWARD
Length = 563
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEV--GPLTNKSSNGDKEDR 187
FK T VQ A +P IL+ D++ ++ TG+GKT+A++LP + V P ++ D
Sbjct: 100 FKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR-------DN 152
Query: 188 KKPEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIV 247
+ P I ++V P+REL Q E LL VQ ++GG ++ L+K+ I+
Sbjct: 153 RHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQIL 212
Query: 248 VGTPGRIAE 256
V TPGR+ +
Sbjct: 213 VATPGRLKD 221
>AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:5738020-5743042
REVERSE
Length = 826
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 130 FKVPTDVQSAAIP-TILKNHDVVIQSYTGSGKTLAYVLPILS-------EVGPLTNKSSN 181
FK PT +Q A + DV+ + TGSGKTLA+ LPIL +VG L
Sbjct: 210 FKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGE 269
Query: 182 GDKEDRKKPEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKK 241
++ + A+I+ P+REL +Q+ +E + K V +VGG +QE LK+
Sbjct: 270 EAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVP-IVGGMFSEKQERRLKE 328
Query: 242 NKPAIVVGTPGRIAEISASG 261
KP IVV TPGR+ E+ ++G
Sbjct: 329 -KPEIVVATPGRLWELMSAG 347
>AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) |
chr5:2790341-2794059 FORWARD
Length = 850
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEV--GPLTNKSSNGDKEDR 187
F+ T VQ A +P IL+ DV+ ++ TG+GKT+A++LP + V P ++ D
Sbjct: 402 FETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR-------DS 454
Query: 188 KKPEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIV 247
++P I ++V P+REL Q E LL VQ ++GG ++ ++ N I+
Sbjct: 455 RQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQIL 514
Query: 248 VGTPGRIAE 256
V TPGR+ +
Sbjct: 515 VATPGRLKD 523
>AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ RNA
binding / helicase/ hydrolase, acting on acid
anhydrides, in phosphorus-containing anhydrides /
nucleic acid binding | chr1:28947492-28951526 REVERSE
Length = 891
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
+KVPT +Q +P IL DVV + TGSGKT A+++P+L ++ K+ +
Sbjct: 48 YKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKL-----------KQHVPQ 96
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+ A+I++P+R+L Q ++ K LG V LVGG + Q E L K P +++
Sbjct: 97 GGVRALILSPTRDLAEQTLK-FTKELGKFTDLRVSLLVGGDSMEDQFEELTKG-PDVIIA 154
Query: 250 TPGRIAEI 257
TPGR+ +
Sbjct: 155 TPGRLMHL 162
>AT5G11200.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 486
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P++VQ IP + DV+ Q+ +G GKT +VL L ++ P S G
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP-----SPG------- 113
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
++ A+++ +REL QI E + V GG N ++ LK P IVVG
Sbjct: 114 -QVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 250 TPGRIAEIS 258
TPGR+ ++
Sbjct: 173 TPGRVLALA 181
>AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:23463284-23466451 REVERSE
Length = 798
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 59 ERTNKIKTDKREKVKLD-SAIEVPKSKVKPIGNHAFRAVPESLEIESTPFSAKSFXXXXX 117
+R N+ TD+ LD + + SK K + N + E E + +SAK F
Sbjct: 280 KRVNRNVTDEELYPPLDINTVREDLSKRKSVDN----VMEEKQEPHDSIYSAKRFDESCI 335
Query: 118 XXXXXXXXXXXXFKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTN 177
T VQ A + L D ++++ TG+GK++A++LP + V
Sbjct: 336 SPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV----L 391
Query: 178 KSSNGDKEDRKKPEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEE 237
K+ N K K I A+I+ P+REL QI E + LL + VQ L+GG ++
Sbjct: 392 KAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQ 451
Query: 238 ALKKNKPAIVVGTPGRIAE 256
L+ I++ TPGR+ +
Sbjct: 452 RLESEPCQILIATPGRLLD 470
>AT5G11200.3 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 468
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P++VQ IP + DV+ Q+ +G GKT +VL L ++ P S G
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP-----SPG------- 113
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
++ A+++ +REL QI E + V GG N ++ LK P IVVG
Sbjct: 114 -QVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 250 TPGRIAEIS 258
TPGR+ ++
Sbjct: 173 TPGRVLALA 181
>AT5G11170.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr5:3553334-3556646
FORWARD
Length = 427
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P++VQ IP + DV+ Q+ +G GKT +VL L ++ P S G
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP-----SPG------- 113
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
++ A+++ +REL QI E + V GG N ++ LK P IVVG
Sbjct: 114 -QVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 250 TPGRIAEIS 258
TPGR+ ++
Sbjct: 173 TPGRVLALA 181
>AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 427
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P++VQ IP + DV+ Q+ +G GKT +VL L ++ P S G
Sbjct: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP-----SPG------- 113
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
++ A+++ +REL QI E + V GG N ++ LK P IVVG
Sbjct: 114 -QVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 250 TPGRIAEIS 258
TPGR+ ++
Sbjct: 173 TPGRVLALA 181
>AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26897235-26899381 REVERSE
Length = 558
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+V T VQ+ IP + + DVV+ + TGSGKTLA++LP + + + SN K
Sbjct: 36 FEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII-----RRSNSYPP--KP 88
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
++ VI++P+REL QI + E + LVGG L++ +++G
Sbjct: 89 HQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIG 148
Query: 250 TPGRIAEI 257
TPGR++++
Sbjct: 149 TPGRLSDM 156
>AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 23/136 (16%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q +IP L D++ ++ G+GKT A+ +P+L ++ P N
Sbjct: 144 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNV----------- 192
Query: 190 PEIEAVIVAPSRELGM---QIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPA- 245
I+A+I+ P+REL + Q+ +E+ K L +Q +V S +++ ++ ++P
Sbjct: 193 --IQAMILVPTRELALQTSQVCKELSKYLN------IQVMVTTGGTSLRDDIMRLHQPVH 244
Query: 246 IVVGTPGRIAEISASG 261
++VGTPGRI +++ G
Sbjct: 245 LLVGTPGRILDLTKKG 260
>AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 23/136 (16%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q +IP L D++ ++ G+GKT A+ +P+L ++ P N
Sbjct: 144 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNV----------- 192
Query: 190 PEIEAVIVAPSRELGM---QIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPA- 245
I+A+I+ P+REL + Q+ +E+ K L +Q +V S +++ ++ ++P
Sbjct: 193 --IQAMILVPTRELALQTSQVCKELSKYLN------IQVMVTTGGTSLRDDIMRLHQPVH 244
Query: 246 IVVGTPGRIAEISASG 261
++VGTPGRI +++ G
Sbjct: 245 LLVGTPGRILDLTKKG 260
>AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 17/133 (12%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q +IP L D++ ++ G+GKT A+ +P+L ++ D+
Sbjct: 151 FERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI-------------DQDN 197
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPA-IVV 248
I+AVI+ P+REL +Q +V K LG K V GG S +++ ++ +P ++V
Sbjct: 198 NVIQAVIIVPTRELALQ-TSQVCKELGKHLKIQVMVTTGGT--SLKDDIMRLYQPVHLLV 254
Query: 249 GTPGRIAEISASG 261
GTPGRI +++ G
Sbjct: 255 GTPGRILDLTKKG 267
>AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 17/133 (12%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q +IP L D++ ++ G+GKT A+ +P+L ++ D+
Sbjct: 151 FERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI-------------DQDN 197
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPA-IVV 248
I+AVI+ P+REL +Q +V K LG K V GG S +++ ++ +P ++V
Sbjct: 198 NVIQAVIIVPTRELALQ-TSQVCKELGKHLKIQVMVTTGGT--SLKDDIMRLYQPVHLLV 254
Query: 249 GTPGRIAEISASG 261
GTPGRI +++ G
Sbjct: 255 GTPGRILDLTKKG 267
>AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding / protein binding |
chr5:4711271-4714713 FORWARD
Length = 712
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F P+ +Q+ + P ++N D+V + TGSGKTL Y++P + + N S R
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDS-------RMG 301
Query: 190 PEIEAVIVAPSRELGMQIVREVEKL-LGPANKKAVQQLVGGANRSRQEEALKKNKPAIVV 248
P I ++++P+REL QI +VE L G ++K + L GGA + Q + +++ IVV
Sbjct: 302 PTI--LVLSPTRELATQI--QVEALKFGKSSKISCACLYGGAPKGPQLKEIERGV-DIVV 356
Query: 249 GTPGRIAEI 257
TPGR+ +I
Sbjct: 357 ATPGRLNDI 365
>AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:14265679-14267880 REVERSE
Length = 733
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
+K P+ +Q AAIP L+ DV+ + TGSGKT A+VLP+L+ + L S + E
Sbjct: 333 YKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPY- 391
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPA-IVV 248
AV++AP+REL QI E K + V +VGG +S +E+ LK + IV+
Sbjct: 392 ----AVVMAPTRELAQQIEEETVKFAHYLGFR-VTSIVGG--QSIEEQGLKITQGCEIVI 444
Query: 249 GTPGRIAEI 257
TPGR+ +
Sbjct: 445 ATPGRLIDC 453
>AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1088
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PT +Q+ P L++ D+V + TGSGKTL Y++P + N S NG
Sbjct: 455 FPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNG------- 507
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P + +I+AP+REL QI E + G +++ + L GGA + Q + L++ IVV
Sbjct: 508 PTV--LILAPTRELATQIQDEALR-FGRSSRISCTCLYGGAPKGPQLKELERGA-DIVVA 563
Query: 250 TPGRIAEI 257
TPGR+ +I
Sbjct: 564 TPGRLNDI 571
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PT +Q+ + P ++ D+V + TGSGKTL Y++P + + N S G
Sbjct: 178 FSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMG------- 230
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P I ++++P+REL QI E K G +++ + L GGA + Q L++ IVV
Sbjct: 231 PTI--LVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVA 286
Query: 250 TPGRIAEI 257
TPGR+ +I
Sbjct: 287 TPGRLNDI 294
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PT +Q+ + P ++ D+V + TGSGKTL Y++P + + N S G
Sbjct: 178 FSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMG------- 230
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P I ++++P+REL QI E K G +++ + L GGA + Q L++ IVV
Sbjct: 231 PTI--LVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVA 286
Query: 250 TPGRIAEI 257
TPGR+ +I
Sbjct: 287 TPGRLNDI 294
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PT +Q+ + P ++ D+V + TGSGKTL Y++P + + N S G
Sbjct: 178 FSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMG------- 230
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P I ++++P+REL QI E K G +++ + L GGA + Q L++ IVV
Sbjct: 231 PTI--LVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVA 286
Query: 250 TPGRIAEI 257
TPGR+ +I
Sbjct: 287 TPGRLNDI 294
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 618
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PT +Q+ + P ++ D+V + TGSGKTL Y++P + + N S G
Sbjct: 178 FSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMG------- 230
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P I ++++P+REL QI E K G +++ + L GGA + Q L++ IVV
Sbjct: 231 PTI--LVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVA 286
Query: 250 TPGRIAEI 257
TPGR+ +I
Sbjct: 287 TPGRLNDI 294
>AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:3576483-3580396 FORWARD
Length = 845
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 134 TDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIE 193
T VQ A + L D ++++ TG+GK++A++LP + V K+ N K K I
Sbjct: 399 TRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV----LKAMNSGKGVHKVAPIF 454
Query: 194 AVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGR 253
+I+ P+REL QI E + LL + VQ L+GG ++ L+ I++ TPGR
Sbjct: 455 VLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGR 514
Query: 254 IAE 256
+ +
Sbjct: 515 LLD 517
>AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:5568482-5570487 REVERSE
Length = 491
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 17/123 (13%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPE- 191
PT VQ+ +P IL DV+ + TGSGKT A+ LPIL + ED P
Sbjct: 81 PTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLA-----------ED---PYG 126
Query: 192 IEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTP 251
+ A++V P+REL Q+ + K LG +VGG + Q +L ++P IV+ TP
Sbjct: 127 VFALVVTPTRELAFQLAEQF-KALGSCLNLRCSVIVGGMDMLTQTMSL-VSRPHIVITTP 184
Query: 252 GRI 254
GRI
Sbjct: 185 GRI 187
>AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:19429083-19431617 REVERSE
Length = 760
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 22/134 (16%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
++ PT +Q A+P +L DV+ + TGSGKT A+VLP++ + +
Sbjct: 248 YEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHI--------------MDQ 293
Query: 190 PEIE------AVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNK 243
PE++ VI AP+REL QI E +K A V + GG ++ Q + LK
Sbjct: 294 PELQRDEGPIGVICAPTRELAHQIFLEAKK-FSKAYGLRVSAVYGGMSKHEQFKELKAG- 351
Query: 244 PAIVVGTPGRIAEI 257
IVV TPGR+ ++
Sbjct: 352 CEIVVATPGRLIDM 365
>AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative |
chr1:7286356-7288842 FORWARD
Length = 828
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 22/134 (16%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
++ P +Q+ A+P I+ D + + TGSGKTL +VLP+L + + +
Sbjct: 211 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI--------------KDQ 256
Query: 190 PEIEA------VIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNK 243
P +EA +++AP+REL QI ++ K P + V + GG+ ++Q LK+
Sbjct: 257 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCV-PVYGGSGVAQQISELKRGT 315
Query: 244 PAIVVGTPGRIAEI 257
IVV TPGR+ +I
Sbjct: 316 -EIVVCTPGRMIDI 328
>AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:18859836-18862318 FORWARD
Length = 528
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 23/136 (16%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q +IP L D++ ++ G+GKT A+ +P L ++ P N
Sbjct: 174 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNV----------- 222
Query: 190 PEIEAVIVAPSRELGM---QIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPA- 245
I+AVI+ P+REL + Q+ +E+ K L ++ +V S +++ ++ +P
Sbjct: 223 --IQAVILVPTRELALQTSQVCKELSKYL------KIEVMVTTGGTSLRDDIMRLYQPVH 274
Query: 246 IVVGTPGRIAEISASG 261
++VGTPGRI +++ G
Sbjct: 275 LLVGTPGRILDLAKKG 290
>AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18) |
chr5:1612077-1615195 FORWARD
Length = 593
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ T VQ+A IP + DV + + TGSGKTLA+V+P++ + +S++ K
Sbjct: 36 FEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE----ILRRSTSFPP---KP 88
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGP-ANKKAVQQLVGGANRSRQEEALKKNKPAIVV 248
++ VI++P+REL QI + + AN +V LVGG + +++ +++
Sbjct: 89 HQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSV-LLVGGREVKADMKIIEEEGCNVLI 147
Query: 249 GTPGRIAEI 257
GTPGR+++I
Sbjct: 148 GTPGRLSDI 156
>AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:7285342-7288842 FORWARD
Length = 1166
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 22/134 (16%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
++ P +Q+ A+P I+ D + + TGSGKTL +VLP+L + + +
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI--------------KDQ 594
Query: 190 PEIEA------VIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNK 243
P +EA +++AP+REL QI ++ K P + V + GG+ ++Q LK+
Sbjct: 595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCV-PVYGGSGVAQQISELKRG- 652
Query: 244 PAIVVGTPGRIAEI 257
IVV TPGR+ +I
Sbjct: 653 TEIVVCTPGRMIDI 666
>AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20) |
chr1:20574634-20577141 FORWARD
Length = 501
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 93 FRAVPE-SLEIESTPFSAKSFXXXXXXXXXXXXXXXXXFKVPTDVQSAAIPTILKNHDVV 151
+R + E ++E + P KSF F PT +QS P +K D++
Sbjct: 81 YRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
Query: 152 IQSYTGSGKTLAYVLPILSEVG--PLTNKSSNGDKEDRKKPEIEAVIVAPSRELGMQIVR 209
+ TGSGKTL+Y+LP + V P+ ++GD P + +++AP+REL +QI +
Sbjct: 141 GIAETGSGKTLSYLLPAIVHVNAQPML---AHGD-----GPIV--LVLAPTRELAVQIQQ 190
Query: 210 EVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAEISAS 260
E K G ++K + GG + Q L+K IV+ TPGR+ ++ S
Sbjct: 191 EASK-FGSSSKIKTTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMMES 239
>AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
+ PT +Q AIP L ++ + TGSGKT ++++PI+S T S + R+
Sbjct: 130 YDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRC---TTYHSEHPSDQRRN 186
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P A+++AP+REL +Q V + K+LG +VGG S Q +++ +++G
Sbjct: 187 P--LAMVLAPTRELCVQ-VEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV-ELIIG 242
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 243 TPGRVVDL 250
>AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
+ PT +Q AIP L ++ + TGSGKT ++++PI+S T S + R+
Sbjct: 130 YDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRC---TTYHSEHPSDQRRN 186
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P A+++AP+REL +Q V + K+LG +VGG S Q +++ +++G
Sbjct: 187 P--LAMVLAPTRELCVQ-VEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV-ELIIG 242
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 243 TPGRVVDL 250
>AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28) |
chr4:9362176-9366449 REVERSE
Length = 789
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 102 IESTPFSAKSFXXXXXXXXXXXXXXXXXFKVPTDVQSAAIPTILKNHDVVIQSYTGSGKT 161
++ F A +F +K PT +Q+A IP L D+ + TGSGKT
Sbjct: 159 VDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKT 218
Query: 162 LAYVLPILSEV--GPLTNKSSNGDKEDRKKPEIEAVIVAPSRELGMQIVREVEKLLGPAN 219
A+ LP L + P ++ +I+ P+REL +QI ++ L +
Sbjct: 219 AAFALPTLERLLFRP------------KRVFATRVLILTPTRELAVQIHSMIQNLAQFTD 266
Query: 220 KKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRI 254
K L+ G R++E + ++ P IVV TPGR+
Sbjct: 267 IKC--GLIVGGLSVREQEVVLRSMPDIVVATPGRM 299
>AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:22298668-22301719 REVERSE
Length = 739
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 15/125 (12%)
Query: 134 TDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPE-- 191
TDVQSAAIP L D++ + TGSGKTLA+V+PIL ++ +R PE
Sbjct: 95 TDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKL-----------HRERWSPEDG 143
Query: 192 IEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTP 251
+ +I++P+REL Q + K +G +K + L+GG E+ + ++ I+V P
Sbjct: 144 VGCIIISPTRELAAQTFGVLNK-VGKFHKFSAGLLIGGREGVDVEKE-RVHEMNILVCAP 201
Query: 252 GRIAE 256
GR+ +
Sbjct: 202 GRLLQ 206
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD
Length = 591
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPI----LSEVGPLTNKSSNGDKEDRK 188
PT +Q +P IL D++ ++TGSGKTL +VLP+ L E + + G
Sbjct: 169 PTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPI---- 224
Query: 189 KPEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQL-----VGGANRSRQEEALKKNK 243
+IV PSREL Q VE+ + P + L +GG + Q E +K+
Sbjct: 225 -----GLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRG- 278
Query: 244 PAIVVGTPGRIAEISA 259
IVV TPGR+ ++ A
Sbjct: 279 VHIVVATPGRLKDMLA 294
>AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/
DEAD/H-box RNA helicase binding | chr5:24980542-24983879
REVERSE
Length = 671
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 136 VQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEV--GPLTNKSSNGDKEDRKKPEIE 193
+Q++ +L D+V ++ TG GKTLA+VLPIL + GP +K G + P +
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYG---RSPSV- 177
Query: 194 AVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGR 253
+++ P+REL Q+ + + G + L GG + QE LK+ IVVGTPGR
Sbjct: 178 -LVLLPTRELAKQVAADFDAYGGSLGLSSC-CLYGGDSYPVQEGKLKRGVD-IVVGTPGR 234
Query: 254 IAE 256
I +
Sbjct: 235 IKD 237
>AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2949152-2952205 REVERSE
Length = 989
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 22/134 (16%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
++ P +Q+ A+P I+ D + + TGSGKTL +VLP+L + + +
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI--------------KDQ 461
Query: 190 PEIEA------VIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNK 243
P +EA +++AP+REL QI ++ K V + GG+ ++Q LK+
Sbjct: 462 PPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICV-PVYGGSGVAQQISELKRG- 519
Query: 244 PAIVVGTPGRIAEI 257
IVV TPGR+ +I
Sbjct: 520 TEIVVCTPGRMIDI 533
>AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26870262-26872152 REVERSE
Length = 465
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 23/132 (17%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+V T VQ+ IP + + DVV+ + TGSGKTLA++LP + + + SN K
Sbjct: 37 FEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII-----RRSNSYPP--KP 89
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEA----LKKNKPA 245
++ VI++P+REL QI K + + + R+ EA L++
Sbjct: 90 HQVMGVIISPTRELSAQI------------HKVARAVRLDFAKCREVEADMNTLEEEGAN 137
Query: 246 IVVGTPGRIAEI 257
+++GTPGR++++
Sbjct: 138 LLIGTPGRLSDM 149
>AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR
1); ATP binding / ATP-dependent helicase/ helicase/
nucleic acid binding | chr1:11479921-11482707 FORWARD
Length = 537
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +QS P +L D++ + TGSGKTLA+ +P + V K G KK
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGS----KK 189
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
++++P+REL +QI + + P K++ + GG+++ Q A++ IV+G
Sbjct: 190 VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSI-CVYGGSSKGPQISAIRSGVD-IVIG 247
Query: 250 TPGRIAEISAS 260
TPGR+ ++ S
Sbjct: 248 TPGRLRDLIES 258
>AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr4:16069669-16071405 REVERSE
Length = 542
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLP--ILSEVGPLTNKSSNGDKEDRKKP 190
PT +Q +P +L D++ ++TGSGKTL +VLP IL+ + + G+
Sbjct: 120 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGP----- 174
Query: 191 EIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQL-----VGGANRSRQEEALKKNKPA 245
A+++ PSREL Q VE+ + + +L +GG + Q + +KK
Sbjct: 175 --IALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV-H 231
Query: 246 IVVGTPGRIAEISA 259
IVV TPGR+ +I A
Sbjct: 232 IVVATPGRLKDILA 245
>AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2980483-2983268 REVERSE
Length = 541
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
FK PT +Q AIP +L + + TGSGKT A++ P+L + L S++G
Sbjct: 161 FKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIK---LKRPSTDG------- 210
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPAN 219
I AVI++P+REL Q RE +KL+ +N
Sbjct: 211 --IRAVILSPARELAAQTAREGKKLIKGSN 238
>AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25318967-25322071
REVERSE
Length = 591
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PT +Q+ P LK D++ + TGSGKTLAY+LP L V S+
Sbjct: 185 FTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV------SAQPRLGQDDG 238
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P + +I+AP+REL +QI E K G + + GGA + Q L++ IV+
Sbjct: 239 PIV--LILAPTRELAVQIQEESRK-FGLRSGVRSTCIYGGAPKGPQIRDLRRGV-EIVIA 294
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 295 TPGRLIDM 302
>AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25319798-25322071
REVERSE
Length = 484
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F PT +Q+ P LK D++ + TGSGKTLAY+LP L V S+
Sbjct: 185 FTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV------SAQPRLGQDDG 238
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
P + +I+AP+REL +QI E K G + + GGA + Q L++ IV+
Sbjct: 239 PIV--LILAPTRELAVQIQEESRK-FGLRSGVRSTCIYGGAPKGPQIRDLRRGV-EIVIA 294
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 295 TPGRLIDM 302
>AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:17705382-17708744 FORWARD
Length = 633
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEI 192
PT VQ AIP +L+ D++ + TGSGKT A+ PI+S G + ++ + R +
Sbjct: 182 PTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS--GIMKDQHVQRPRGSRTVYPL 239
Query: 193 EAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPG 252
AVI++P+REL QI E +K K V GG ++Q L++ I+V TPG
Sbjct: 240 -AVILSPTRELASQIHDEAKKFSYQTGVKVVVAY-GGTPINQQLRELERGV-DILVATPG 296
Query: 253 RIAEI 257
R+ ++
Sbjct: 297 RLNDL 301
>AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEI 192
PT VQ AIP +L D++ + TGSGKT A+ PI+S G + ++ + R
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS--GIMKDQHVERPRGSRAVYPF 231
Query: 193 EAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPG 252
AVI++P+REL QI E +K K V GG +Q L++ I+V TPG
Sbjct: 232 -AVILSPTRELACQIHDEAKKFSYQTGVKVVVAY-GGTPIHQQLRELERGC-DILVATPG 288
Query: 253 RIAEI 257
R+ ++
Sbjct: 289 RLNDL 293
>AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEI 192
PT VQ AIP +L D++ + TGSGKT A+ PI+S G + ++ + R
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS--GIMKDQHVERPRGSRAVYPF 231
Query: 193 EAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPG 252
AVI++P+REL QI E +K K V GG +Q L++ I+V TPG
Sbjct: 232 -AVILSPTRELACQIHDEAKKFSYQTGVKVVVAY-GGTPIHQQLRELERGC-DILVATPG 288
Query: 253 RIAEI 257
R+ ++
Sbjct: 289 RLNDL 293
>AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEI 192
PT VQ AIP +L D++ + TGSGKT A+ PI+S G + ++ + R
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS--GIMKDQHVERPRGSRAVYPF 231
Query: 193 EAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPG 252
AVI++P+REL QI E +K K V GG +Q L++ I+V TPG
Sbjct: 232 -AVILSPTRELACQIHDEAKKFSYQTGVKVVVAY-GGTPIHQQLRELERGC-DILVATPG 288
Query: 253 RIAEI 257
R+ ++
Sbjct: 289 RLNDL 293
>AT5G11170.2 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr5:3554272-3556646
FORWARD
Length = 344
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 149 DVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIEAVIVAPSRELGMQIV 208
DV+ Q+ +G GKT +VL L ++ P S G ++ A+++ +REL QI
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEP-----SPG--------QVSALVLCHTRELAYQIC 48
Query: 209 REVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAEIS 258
E + V GG N ++ LK P IVVGTPGR+ ++
Sbjct: 49 NEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALA 98
>AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:6399724-6403007 REVERSE
Length = 568
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ T +Q+ +I +L+ DV+ + TGSGKTLA+++P + + NG
Sbjct: 109 FQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNG------- 161
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+++ P+REL +Q E+LL + + V ++GG NR R E + +V+
Sbjct: 162 --TGVIVICPTRELAIQTKNVAEELL-KHHSQTVSMVIGGNNR-RSEAQRIASGSNLVIA 217
Query: 250 TPGRIAE 256
TPGR+ +
Sbjct: 218 TPGRLLD 224
>AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase/
translation initiation factor | chr1:20260495-20262018
FORWARD
Length = 412
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q I K DV+ Q+ +G+GKT + +L ++ D
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------------DYAL 105
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+ +A+++AP+REL QI +V + LG V VGG + R+++ + + +VVG
Sbjct: 106 LQCQALVLAPTRELAQQI-EKVMRALGDYQGVKVHACVGGTS-VREDQRILQAGVHVVVG 163
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 164 TPGRVFDM 171
>AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:26358328-26361244 FORWARD
Length = 633
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F T +Q+ AIP ++ DV+ + TGSGKTLA+++P + + + NG
Sbjct: 174 FARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNG------- 226
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+++ P+REL +Q ++LL + + V +++GG R + E L K ++V
Sbjct: 227 --TGVLVICPTRELAIQSYGVAKELL-KYHSQTVGKVIGGEKRKTEAEILAKG-VNLLVA 282
Query: 250 TPGRIAE 256
TPGR+ +
Sbjct: 283 TPGRLLD 289
>AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 748
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 136 VQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIEAV 195
+Q A + L+ D++ ++ TG+GKTLA+ +PI+ LT ++ + R + +
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKR---LTEEAGDYTAFRRSGRLPKFL 184
Query: 196 IVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIA 255
++AP+REL Q+ +E+++ A + + GG + + Q+ AL + +VVGTPGRI
Sbjct: 185 VLAPTRELAKQVEKEIKE---SAPYLSTVCVYGGVSYTIQQSALTRGVD-VVVGTPGRII 240
Query: 256 EI 257
++
Sbjct: 241 DL 242
>AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 747
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 136 VQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIEAV 195
+Q A + L+ D++ ++ TG+GKTLA+ +PI+ LT ++ + R + +
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKR---LTEEAGDYTAFRRSGRLPKFL 184
Query: 196 IVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIA 255
++AP+REL Q+ +E+++ A + + GG + + Q+ AL + +VVGTPGRI
Sbjct: 185 VLAPTRELAKQVEKEIKE---SAPYLSTVCVYGGVSYTIQQSALTRGVD-VVVGTPGRII 240
Query: 256 EI 257
++
Sbjct: 241 DL 242
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592586-4594128 REVERSE
Length = 415
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q I K DV+ Q+ +G+GKT + +L ++ D
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------------DFSL 105
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+ +A+++AP+REL QI +V + LG V VGG + R+++ + + +VVG
Sbjct: 106 IQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTS-VREDQRILQAGVHVVVG 163
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 164 TPGRVFDM 171
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594094 REVERSE
Length = 402
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q I K DV+ Q+ +G+GKT + +L ++ D
Sbjct: 49 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------------DFSL 95
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+ +A+++AP+REL QI +V + LG V VGG + R+++ + + +VVG
Sbjct: 96 IQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTS-VREDQRILQAGVHVVVG 153
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 154 TPGRVFDM 161
>AT1G72730.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:27378040-27379593
REVERSE
Length = 414
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q I K DV+ Q+ +G+GKT + +L ++ D
Sbjct: 61 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------------DISL 107
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+ +A+++AP+REL QI +V + LG Q VGG + R+++ + ++ +VVG
Sbjct: 108 VQCQALVLAPTRELAQQI-EKVMRALGDYLGVKAQACVGGTS-VREDQRVLQSGVHVVVG 165
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 166 TPGRVFDL 173
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594128 REVERSE
Length = 412
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q I K DV+ Q+ +G+GKT + +L ++ D
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-------------DFSL 105
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+ +A+++AP+REL QI +V + LG V VGG + R+++ + + +VVG
Sbjct: 106 IQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTS-VREDQRILQAGVHVVVG 163
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 164 TPGRVFDM 171
>AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359628-360734 FORWARD
Length = 368
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 140 AIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIEAVIVAP 199
AIP L ++ + TGSGKT ++++PI+S T S + R+ P A+++AP
Sbjct: 3 AIPAALTGKSLLASADTGSGKTASFLVPIISRC---TTYHSEHPSDQRRNP--LAMVLAP 57
Query: 200 SRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAEI 257
+REL +Q V + K+LG +VGG S Q +++ +++GTPGR+ ++
Sbjct: 58 TRELCVQ-VEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV-ELIIGTPGRVVDL 113
>AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:21657099-21660352 FORWARD
Length = 646
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 133 PTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEI 192
PT VQ AIP + D++ + TGSGKT A+ PI+S G + ++ + R +
Sbjct: 169 PTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS--GIMKDQHIERPRGVRGVYPL 226
Query: 193 EAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPG 252
AVI++P+REL QI E K K V GG ++Q L++ I+V TPG
Sbjct: 227 -AVILSPTRELACQIHDEARKFSYQTGVKVVVAY-GGTPVNQQIRELERGV-DILVATPG 283
Query: 253 RIAEISASG 261
R+ ++ G
Sbjct: 284 RLNDLLERG 292
>AT3G19760.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative | chr3:6863790-6866242 FORWARD
Length = 408
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F+ P+ +Q A+ IL+ DV+ Q+ +G+GKT L + V D
Sbjct: 55 FEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVV-------------DTSS 101
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
E++A+I++P+REL Q + ++ + AN +A +GG + L ++ +V G
Sbjct: 102 REVQALILSPTRELATQTEKTIQAIGLHANIQA-HACIGGNSVGEDIRKL-EHGVHVVSG 159
Query: 250 TPGRIAEI 257
TPGR+ ++
Sbjct: 160 TPGRVCDM 167
>AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22) |
chr1:22090369-22092885 REVERSE
Length = 581
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
F P+ Q+ IP+IL DV++ + TGSGKT Y+ PI+ ++ S ++E+R
Sbjct: 100 FDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPF 159
Query: 190 P-EIEAVIVAPSRELGMQIVREVEKLL 215
P + ++I+ P+ L Q+VR V L+
Sbjct: 160 PLKNISLILCPNVMLCEQVVRMVNGLV 186
>AT1G28180.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr1:9843084-9845002
REVERSE
Length = 614
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 140 AIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIEAVIVAP 199
IP L+ DV+ S TGSGKT A+VLP+L+ + L +E+ + A+++ P
Sbjct: 232 TIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPM-----REENQTEGPYALVMVP 286
Query: 200 SRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPA-IVVGTPGRIAEI 257
+REL QI E K KAV + G S +++ALK ++ IV+ TPGR+ +
Sbjct: 287 TRELAHQIEEETVKFSRYLGFKAV-SITGWE--SIEKQALKLSQGCEIVIATPGRLLDC 342
>AT1G51380.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:19047960-19049967
FORWARD
Length = 392
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
Query: 130 FKVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKK 189
+K P+++Q A+ ILK DV+ Q+ +G+GKT + + + N SS
Sbjct: 42 YKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ----IVNISSR-------- 89
Query: 190 PEIEAVIVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVG 249
+++ ++++PSREL Q + ++ + N +A +GG + + L++ A V G
Sbjct: 90 -KVQVLVLSPSRELASQTEKTIQAIGAHTNIQA-HACIGGKSIGEDIKKLERGVHA-VSG 146
Query: 250 TPGRIAEISASG 261
TPGR+ ++ G
Sbjct: 147 TPGRVYDMIKRG 158
>AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIAL
RNA HELICASE 1); ATP-dependent helicase/ DNA binding /
RNA binding | chr3:7887382-7889806 FORWARD
Length = 610
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 136 VQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIEAV 195
+Q A + ++ D++ ++ TG+GKTLA+ +PI+ ++ K G K P + +
Sbjct: 142 IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRG-----KNP--QCL 194
Query: 196 IVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIA 255
++AP+REL Q+ +E + A L GG +Q L + VGTPGRI
Sbjct: 195 VLAPTRELARQVEKEFRE---SAPSLDTICLYGGTPIGQQMRELNYGID-VAVGTPGRII 250
Query: 256 EISASG 261
++ G
Sbjct: 251 DLMKRG 256
>AT3G53110.1 | Symbols: LOS4 | LOS4 (LOW EXPRESSION OF OSMOTICALLY
RESPONSIVE GENES 4); ATP-dependent helicase/ RNA
helicase/ RNA-dependent ATPase | chr3:19687968-19690423
FORWARD
Length = 496
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 21/135 (15%)
Query: 130 FKVPTDVQSAAIPTILK--NHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDR 187
F+ P+ +Q+ ++P I+ + ++ Q++ GSGKT +VL +LS V P
Sbjct: 112 FEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLR---------- 161
Query: 188 KKPEIEAVIVAPSRELG---MQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKP 244
E +A+ + P+REL M++++++ K G + AV GA + + + +
Sbjct: 162 ---EPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAH-- 216
Query: 245 AIVVGTPGRIAEISA 259
+V+GTPG + + A
Sbjct: 217 -VVIGTPGTLKKWMA 230
>AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA
helicase 2); ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:7892641-7895145
FORWARD
Length = 616
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 136 VQSAAIPTILKNHDVVIQSYTGSGKTLAYVLPILSEVGPLTNKSSNGDKEDRKKPEIEAV 195
+Q A + ++ D++ ++ TG+GKTLA+ +PI+ ++ K G + P +
Sbjct: 130 IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRG-----RNP--LCL 182
Query: 196 IVAPSRELGMQIVREVEKLLGPANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIA 255
++AP+REL Q+ +E + A L GG +Q L + VGTPGR+
Sbjct: 183 VLAPTRELARQVEKEFRE---SAPSLDTICLYGGTPIGQQMRQLDYGVD-VAVGTPGRVI 238
Query: 256 EISASG 261
++ G
Sbjct: 239 DLMKRG 244