Jatropha Genome Database

JcCB0433251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.20 - phase: 0 
         (122 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative ...   203   2e-53

>AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative |
           chr1:29112194-29114323 REVERSE
          Length = 369

 Score =  203 bits (516), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 112/130 (86%), Gaps = 8/130 (6%)

Query: 1   MQSTHMASE--------QITEEAVYLCTGNPLPRDIEQISYWLLNESFAETLKRISEIKT 52
           +QSTHMAS+        QITEE VYLCTGNPLP+DIEQIS+WLLN+ F E  K +SEIKT
Sbjct: 240 LQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEIKT 299

Query: 53  KKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCNDKLQLGSLISSFTR 112
           +KGLA+VDIV+E+T+F+FKIKMPS VRVQLIND+ADIEYRLSFGCNDKLQLG++IS+FT 
Sbjct: 300 RKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTFTH 359

Query: 113 ARSTLVAAAK 122
           ARS +V AAK
Sbjct: 360 ARSIIVGAAK 369