Jatropha Genome Database

JcCB0433251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.10 + phase: 0 /partial
         (50 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77460.1 | Symbols:  | binding | chr1:29104378-29111580 FORWARD     78   1e-15
AT1G44120.1 | Symbols:  | C2 domain-containing protein / armadil...    59   6e-10

>AT1G77460.1 | Symbols:  | binding | chr1:29104378-29111580 FORWARD
          Length = 2136

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/50 (70%), Positives = 46/50 (92%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNRTSE 50
            +TLG+VTIQIDKVVTEG Y+G  SLNHE++KD SSR+L+IEI+W+NRT++
Sbjct: 2084 TTLGRVTIQIDKVVTEGEYSGSLSLNHENSKDASSRSLDIEIAWSNRTTD 2133


>AT1G44120.1 | Symbols:  | C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein |
            chr1:16780610-16787414 FORWARD
          Length = 2114

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 3    LGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSS-RTLEIEISWTNRT 48
            LGKV I IDKV++EG Y+G+F LN ES KD SS R+LEIEI W+N++
Sbjct: 2067 LGKVRIPIDKVLSEGSYSGIFKLNDESKKDNSSDRSLEIEIVWSNQS 2113