Jatropha Genome Database

JcCB0432541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432541.10 + phase: 0 /pseudo/partial
         (163 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF ...    88   2e-18
AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITIO...    87   6e-18

>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF
           REPLICATION COMPLEX 1B); DNA binding / double-stranded
           methylated DNA binding / protein binding |
           chr4:7459812-7462253 REVERSE
          Length = 813

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 117 ELGESRIILCEPGARHRLQKLQLNFPSDDVAFALKGSQELPWLAKYL 163
           +LGE RIILCEPG +HRLQKLQLNFPSDDVAFALK +++LPWLA YL
Sbjct: 767 DLGECRIILCEPGEKHRLQKLQLNFPSDDVAFALKDNKDLPWLANYL 813


>AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITION
           COMPLEX 1); DNA binding / double-stranded methylated DNA
           binding | chr4:8422236-8424665 FORWARD
          Length = 809

 Score = 86.7 bits (213), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 117 ELGESRIILCEPGARHRLQKLQLNFPSDDVAFALKGSQELPWLAKYL 163
           +LGE RI+LCEPG +HRLQKLQLNFPSDDVAFALK +++LPWLA YL
Sbjct: 763 DLGECRIVLCEPGEKHRLQKLQLNFPSDDVAFALKDNKDLPWLANYL 809