Jatropha Genome Database

JcCB0432331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432331.10 + phase: 0 /partial
         (110 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02610.1 | Symbols:  | tryptophan synthase, alpha subunit, pu...   160   2e-40
AT3G54640.1 | Symbols: TSA1, TRP3 | TSA1 (TRYPTOPHAN SYNTHASE AL...   150   1e-37

>AT4G02610.1 | Symbols:  | tryptophan synthase, alpha subunit,
           putative | chr4:1147662-1149217 FORWARD
          Length = 275

 Score =  160 bits (404), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 94/116 (81%), Gaps = 14/116 (12%)

Query: 9   VLLTTPTTPKGRMKAIVKASEGFVYLVSSVGVTGARAS--------------ETTKPVAV 54
           VLLTTPTTPK RM AIV+ASEGF+YLVSSVGVTG R S               T+KPVAV
Sbjct: 159 VLLTTPTTPKERMNAIVEASEGFIYLVSSVGVTGTRESVNEKVQSLLQQIKEATSKPVAV 218

Query: 55  GFGISKPEHVKQVAGWGADGVIVGSAIVKVLGDAKSPEEGLKELENLTKSLKSALL 110
           GFGISKPEHVKQVA WGADGVIVGSA+VK+LG+++SPE+GLKELE  TKSLKSAL+
Sbjct: 219 GFGISKPEHVKQVAEWGADGVIVGSAMVKILGESESPEQGLKELEFFTKSLKSALV 274


>AT3G54640.1 | Symbols: TSA1, TRP3 | TSA1 (TRYPTOPHAN SYNTHASE ALPHA
           CHAIN); tryptophan synthase | chr3:20223331-20225303
           REVERSE
          Length = 312

 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 85/105 (80%), Gaps = 14/105 (13%)

Query: 20  RMKAIVKASEGFVYLVSSVGVTGARAS--------------ETTKPVAVGFGISKPEHVK 65
           RMK IV ASEGF+YLVSS+GVTGAR+S               T KPVAVGFGISKPEHVK
Sbjct: 208 RMKLIVDASEGFIYLVSSIGVTGARSSVSGKVQSLLKDIKEATDKPVAVGFGISKPEHVK 267

Query: 66  QVAGWGADGVIVGSAIVKVLGDAKSPEEGLKELENLTKSLKSALL 110
           Q+AGWGADGVIVGSA+VK+LGDAKSP EGLKELE LTKSLKSALL
Sbjct: 268 QIAGWGADGVIVGSAMVKLLGDAKSPTEGLKELEKLTKSLKSALL 312