Jatropha Genome Database

JcCB0432121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432121.10 - phase: 2 /partial
         (185 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16700.1 | Symbols: PSD1 | PSD1 (phosphatidylserine decarboxy...   286   6e-78
AT4G25970.1 | Symbols: PSD3 | PSD3 (phosphatidylserine decarboxy...    60   1e-09
AT5G57190.1 | Symbols: PSD2 | PSD2 (phosphatidylserine decarboxy...    54   4e-08

>AT4G16700.1 | Symbols: PSD1 | PSD1 (phosphatidylserine
           decarboxylase 1); phosphatidylserine decarboxylase |
           chr4:9395815-9398261 REVERSE
          Length = 453

 Score =  286 bits (732), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 134/184 (72%), Positives = 157/184 (85%), Gaps = 3/184 (1%)

Query: 1   IDCSPKKGLYYCVIYLRPGDYHRIHSPVEWNVLVRRHFTGWVGNLFPMNERATRTIRNLY 60
           +  SP KGLYYCVIYL+PGDYHRIHSP +WN  VRRHF    G LFP+NERATRTIRNLY
Sbjct: 272 VSASPMKGLYYCVIYLKPGDYHRIHSPADWNATVRRHF---AGRLFPVNERATRTIRNLY 328

Query: 61  VENERVVLEGLWQEGFMAIAAIGATNIGSIELFIEPELCTNLPRKKLLNSQPPEERVYEP 120
           VENERVVLEG+W+EGFMA+AA+GATNIGSIELFIEPEL TN P+KKL  ++PPEERVY+P
Sbjct: 329 VENERVVLEGIWKEGFMALAAVGATNIGSIELFIEPELRTNKPKKKLFPTEPPEERVYDP 388

Query: 121 EGIGKMLKKGEEVAAFNMGSTVVLVFQAPTLKLLKNRDSSSEFRFNIKRGDRVRVGEALG 180
           EG+G  L+KG+EVA FNMGSTVVL+FQAPT    +   SSS++RF +K+GDRVRVG+ALG
Sbjct: 389 EGLGLRLEKGKEVAVFNMGSTVVLIFQAPTANTPEGSSSSSDYRFCVKQGDRVRVGQALG 448

Query: 181 RWHD 184
           RW +
Sbjct: 449 RWKE 452


>AT4G25970.1 | Symbols: PSD3 | PSD3 (phosphatidylserine
           decarboxylase 3); phosphatidylserine decarboxylase |
           chr4:13184240-13189139 FORWARD
          Length = 635

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 33/144 (22%)

Query: 13  VIYLRPGDYHRIHSPVEWNVLVRRHFTGWVGNLFPMNERATRT-IRNLYVENER-VVLEG 70
           +  L P DYHR HSPV     V   F    G+L+ +N  A  +   N++ EN+R +V+  
Sbjct: 486 IFRLAPQDYHRFHSPVSG---VIEKFVNVSGSLYTVNPIAVNSKYCNVFTENKRTIVIIS 542

Query: 71  LWQEGFMAIAAIGATNIGSIELFIEPELCTNLPRKKLLNSQPPEERVYEPEGIGKMLKKG 130
             + G +A  AIGAT +GSI  F+  E                          G  +KKG
Sbjct: 543 TAEFGKVAFVAIGATMVGSIS-FVRQE--------------------------GDHVKKG 575

Query: 131 EEVAAFNM-GSTVVLVFQAPTLKL 153
           +E+  F+  GSTV+ VF+  ++K+
Sbjct: 576 DELGYFSFGGSTVICVFEKDSIKI 599


>AT5G57190.1 | Symbols: PSD2 | PSD2 (phosphatidylserine
           decarboxylase 2); phosphatidylserine decarboxylase |
           chr5:23171531-23175364 REVERSE
          Length = 635

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 33/142 (23%)

Query: 13  VIYLRPGDYHRIHSPVEWNVLVRRHFTGWVGNLFPMNERATRT-IRNLYVENERVV-LEG 70
           +  L P DYHR H PV     V   F    G+L+ +N  A  +   N++ EN+R V +  
Sbjct: 487 IFRLAPQDYHRFHVPVSG---VIEQFVDVSGSLYTVNPIAVNSKYCNVFTENKRTVAIIS 543

Query: 71  LWQEGFMAIAAIGATNIGSIELFIEPELCTNLPRKKLLNSQPPEERVYEPEGIGKMLKKG 130
             + G +A  AIGAT +GSI          N  RK+                 G+ +KKG
Sbjct: 544 TAEFGKVAFVAIGATMVGSI----------NFVRKE-----------------GEHVKKG 576

Query: 131 EEVAAFNM-GSTVVLVFQAPTL 151
           +E+  F+  GSTV+ VF+   +
Sbjct: 577 DELGYFSFGGSTVICVFEKDAI 598